David Hoover wrote:

We've run into an error with the SAM to BAM converter.

An error occurred running this job: Samtools Version: 0.1.15 (r949:203) Error extracting alignments from (/gs1/users/galaxy/pro/database/files/000/dataset_285.dat), requested number of bytes is more than a Python string can hold

We are running 32-bit Python. Would this be the problem, or do we need a newer version of samtools?

Hey David, 64 bit would probably fix it since with it you get a much larger python string. But this should have been fixed in 3581:c07a6bdc794c, are you running an older version? --nate

David Hoover Helix Systems Staff http://helix.nih.gov ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

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