Galaxy team,

I am running a locally configured Galaxy instance using Python 2.7. I am getting an error on SAM_to_BAM unable to fetch eggs. When I change back to Python 2.6, the problem is removed and I can run the tool.

Is there a quick fix for this problem?

Thanks,

Kirt

-----Original Message----- From: khaden@illumina.com [mailto:khaden@illumina.com] Sent: Thursday, September 29, 2011 8:07 AM To: Haden, Kirt; Haden, Kirt Subject: Galaxy tool error report from khaden@illumina.com

GALAXY TOOL ERROR REPORT

------------------------

This error report was sent from the Galaxy instance hosted on the server "ussd-dev-lnx01.illumina.com"

-----------------------------------------------------------------------------

This is in reference to dataset id 301 from history id 68

-----------------------------------------------------------------------------

You should be able to view the history containing the related history item

7: SAM-to-BAM on data 6: converted BAM

by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link.

ussd-dev-lnx01.illumina.com/history/view?id=42e99d98e0ee2844

-----------------------------------------------------------------------------

The user 'khaden@illumina.com' provided the following information:

-----------------------------------------------------------------------------

job id: 200

tool id: sam_to_bam

-----------------------------------------------------------------------------

job command line:

python /home/galaxy/eval/sept09/galaxy-central/tools/samtools/sam_to_bam.py --input1=/home/galaxy/production/Sept06/galaxy-central/database/files/000/dataset_300.dat --dbkey=PhiX --output1=/home/galaxy/production/Sept06/galaxy-central/database/files/000/dataset_301.dat --index_dir=/home/galaxy/eval/sept09/galaxy-central/tool-data

-----------------------------------------------------------------------------

job stderr:

Traceback (most recent call last):

File "/home/galaxy/eval/sept09/galaxy-central/tools/samtools/sam_to_bam.py", line 14, in ?

import pkg_resources; pkg_resources.require( "bx-python" )

File "/home/galaxy/eval/sept09/galaxy-central/lib/galaxy/eggs/__init__.py", line 415, in require

raise EggNotFetchable( str( [ egg.name for egg in e.eggs ] ) )

galaxy.eggs.EggNotFetchable: ['bx_python']

-----------------------------------------------------------------------------

job stdout:

-----------------------------------------------------------------------------

job info:

None

-----------------------------------------------------------------------------

job traceback:

None

-----------------------------------------------------------------------------

(This is an automated message).