Retreiving a library data type in <command>
Hi all, Have searched mailing list to no avail. Therefore: How can I get a data library's data_type in the <command> tagset? Example: <command> dosomething.pl
oops, clicked send too early.. On 19 October 2012 16:33, Simon Gladman <simon.gladman@monash.edu> wrote:
Hi all,
Have searched mailing list to no avail. Therefore:
How can I get a data library's data_type in the <command> tagset?
Example:
<command> dosomething.pl filename.data_type
</command> <inputs> <param type='data' format='fasta,fastq,sam,bam' name='filename' label='a data set from imported datasets...'/> </inputs> So is the file of type: fasta, fastq, sam or bam and how can I get that into the <command> tag? Thanks in advance, Simon Gladman.
$filename.ext From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Simon Gladman Sent: Friday, 19 October 2012 4:38 PM To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Retreiving a library data type in <command> oops, clicked send too early.. On 19 October 2012 16:33, Simon Gladman <simon.gladman@monash.edu<mailto:simon.gladman@monash.edu>> wrote: Hi all, Have searched mailing list to no avail. Therefore: How can I get a data library's data_type in the <command> tagset? Example: <command> dosomething.pl<http://dosomething.pl> filename.data_type </command> <inputs> <param type='data' format='fasta,fastq,sam,bam' name='filename' label='a data set from imported datasets...'/> </inputs> So is the file of type: fasta, fastq, sam or bam and how can I get that into the <command> tag? Thanks in advance, Simon Gladman.
participants (2)
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Alex.Khassapov＠csiro.au -
Simon Gladman