Cannot see data when selecting "Display Data in Browser"
I'm seeing some weird behavior in our local galaxy instance and am wondering if anyone has seen anything similar. I have a custom tool that I've written that generates a tab-delimted file. When I click on the item name in the history, I can see the contents in the "preview" window. However, when I click on the eye (Display Data in Browser), it comes up empty. Same thing if I download the file. However, if I go to the database directory to examine the file on disk, the content is exactly what I would expect. The permissions on the file are galaxy user/group and the file has permissions of 644. I don't see any reason why I shouldn't be able to view or download this file through galaxy. Any ideas? Thanks, Dave --- Dave Walton Manager Scientific Computing The Jackson Laboratory Bar Harbor, Maine Dave.walton@jax.org The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.
Hey Dave, What revision are you running locally? And, just to confirm, in galaxy the file is recognized as a 'tabular' file type? -Dannon On Dec 7, 2012, at 1:25 PM, Dave Walton <Dave.Walton@jax.org> wrote:
I'm seeing some weird behavior in our local galaxy instance and am wondering if anyone has seen anything similar.
I have a custom tool that I've written that generates a tab-delimted file. When I click on the item name in the history, I can see the contents in the "preview" window. However, when I click on the eye (Display Data in Browser), it comes up empty. Same thing if I download the file. However, if I go to the database directory to examine the file on disk, the content is exactly what I would expect. The permissions on the file are galaxy user/group and the file has permissions of 644.
I don't see any reason why I shouldn't be able to view or download this file through galaxy.
Any ideas?
Thanks,
Dave
--- Dave Walton Manager Scientific Computing The Jackson Laboratory Bar Harbor, Maine Dave.walton@jax.org The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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Dannon Baker
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Dave Walton