Hi Dan
Thank you very much. The display works nicely, now.
Thanks, Hans
On 07/07/2011 06:14 PM, Daniel Blankenberg wrote:
Hi Hans,
Very sorry for the delay in response. The sample file that was included was incorrect,
but has been updated in changeset 5775:4220f8a5c571 and should now display an interface.
If you would like to use or run the tool, you may find
$GALAXY_ROOT/scripts/tools/annotation_profiler/README.txt helpful. Please let us know if
you encounter further difficulties.
Thanks for using Galaxy,
Dan
On Jun 8, 2011, at 8:10 AM, Hans-Rudolf Hotz wrote:
> Hi
>
> we are looking into different methods to display dynamic contents in the tool user
interface.
>
> To start, we looked at the 'Operate on Genomic Intervals:Profile Annotations'
tool. We turned it on in a local installation (May 20, "8c11dd28a3cf" release),
but we struggled to get the interface to work.
>
>
> On 'http://main.g2.bx.psu.edu/', the tables to choose from are only displayed
if there is a history item with: "format: bed, database: hg18".
>
> But in our local test installation, we don't get the list of tables, no matter
whether we have a ('hg18') bed file in our history or not. It looks like as if the
'from_file="annotation_profiler_options.xml"' statement in the
"annotation_profiler.xml" is ignored.
>
> I know, the file 'annotation_profiler_options.xml' is read, since I get an
error during restart, if I provide invalid xml.
>
> Is there anything else, I have to enable, in order to get this interface to work?
Currently, I don't care about the tools functionality, I just want the (cool)
interface to work.
>
>
> Thank you very much for your help.
>
>
> Regards, Hans
>
>
>
> PS: this question is connected to Tim's question yesterday - I just
> should have sent mine first - sorry.
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