how to generate .len file for custom genome? (trackster error)
Trackster complains to me when I try to load up my custom reference genome to compare some sample data to. "could not load chroms for this dbkey" I think it's because I'm using the newest g1k human ref genome v37, and I don't know if the hg19.len file works with it... I generated my own twobit file for it, but now I think I need the .len file... To be honest I'm kind of lost. Where does trackster even look for my genome, and how do I generate a .len file? (I read the visualizations page and the custom genome docs page)
On 10/01/2013 10:21 PM, Ben Gift wrote:
Trackster complains to me when I try to load up my custom reference genome to compare some sample data to.
"could not load chroms for this dbkey"
I think it's because I'm using the newest g1k human ref genome v37, and I don't know if the hg19.len file works with it...
I generated my own twobit file for it, but now I think I need the .len file...
To be honest I'm kind of lost. Where does trackster even look for my genome, and how do I generate a .len file? (I read the visualizations page and the custom genome docs page)
Have you read this page: http://wiki.galaxyproject.org/Visualization%20Setup#Get_genome_chromosome_le... Regards, Hans-Rudolf
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participants (2)
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Ben Gift -
Hans-Rudolf Hotz