On 10/01/2013 10:21 PM, Ben Gift wrote:

Trackster complains to me when I try to load up my custom reference genome to compare some sample data to.

"could not load chroms for this dbkey"

I think it's because I'm using the newest g1k human ref genome v37, and I don't know if the hg19.len file works with it...

I generated my own twobit file for it, but now I think I need the .len file...

To be honest I'm kind of lost. Where does trackster even look for my genome, and how do I generate a .len file? (I read the visualizations page and the custom genome docs page)

Have you read this page:

http://wiki.galaxyproject.org/Visualization%20Setup#Get_genome_chromosome_le...

Regards, Hans-Rudolf

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