Ability to Select SGE queue?
I'd like to provide a choice to my users which size Queue they would like to use when they are about to run a tool. I'm using the SGE configuration through DRMAA on my local install. I've only seen the queue set in the wsgi.ini file. Is there a way I can include this choice of SGE queue in my xml? Thanks Raymond Moore Informatics Specialist, Division of Biomedical Statistics & Informatics | 507-293-0054 Mayo Clinic | 200 First Street SW | Rochester, MN 55905 | www.mayoclinic.org <http://www.mayoclinic.org/>
On Mon, Jul 9, 2012 at 5:34 PM, Moore, Raymond M. <Moore.Raymond@mayo.edu> wrote:
I’d like to provide a choice to my users which size Queue they would like to use when they are about to run a tool.
I’m using the SGE configuration through DRMAA on my local install. I’ve only seen the queue set in the wsgi.ini file.
Is there a way I can include this choice of SGE queue in my xml?
Thanks
You can set the queue for each tool in the universe.xml file, but that is all at the moment AFAIK. More flexible options currently requires modification to Galaxy, e.g. http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html Peter
Thank you Peter, That's exactly what I was looking for. I'd really like to implement the functionality defined by John Chilton. The ability to select a queue based on the input size is very important to our group. Thanks again. -----Original Message----- From: Peter Cock [mailto:p.j.a.cock@googlemail.com] Sent: Monday, July 09, 2012 12:07 PM To: Moore, Raymond M. Cc: Galaxy Dev Subject: Re: [galaxy-dev] Ability to Select SGE queue? On Mon, Jul 9, 2012 at 5:34 PM, Moore, Raymond M. <Moore.Raymond@mayo.edu> wrote:
I'd like to provide a choice to my users which size Queue they would like to use when they are about to run a tool.
I'm using the SGE configuration through DRMAA on my local install. I've only seen the queue set in the wsgi.ini file.
Is there a way I can include this choice of SGE queue in my xml?
Thanks
You can set the queue for each tool in the universe.xml file, but that is all at the moment AFAIK. More flexible options currently requires modification to Galaxy, e.g. http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html Peter
On Jul 9, 2012, at 4:55 PM, Moore, Raymond M. wrote:
Thank you Peter,
That's exactly what I was looking for. I'd really like to implement the functionality defined by John Chilton.
The ability to select a queue based on the input size is very important to our group.
Thanks again.
-----Original Message----- From: Peter Cock [mailto:p.j.a.cock@googlemail.com] Sent: Monday, July 09, 2012 12:07 PM To: Moore, Raymond M. Cc: Galaxy Dev Subject: Re: [galaxy-dev] Ability to Select SGE queue?
On Mon, Jul 9, 2012 at 5:34 PM, Moore, Raymond M. <Moore.Raymond@mayo.edu> wrote:
I'd like to provide a choice to my users which size Queue they would like to use when they are about to run a tool.
I'm using the SGE configuration through DRMAA on my local install. I've only seen the queue set in the wsgi.ini file.
Is there a way I can include this choice of SGE queue in my xml?
Thanks
You can set the queue for each tool in the universe.xml file, but that is all at the moment AFAIK.
More flexible options currently requires modification to Galaxy, e.g. http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html
These changes have been accepted, the dynamic runner should be usable now (and part of the next -dist which we are hoping to have out next week, before the GCC). --nate
Peter
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participants (3)
-
Moore, Raymond M. -
Nate Coraor -
Peter Cock