Hi Galaxy Dev, I just pulled the latest updates for galaxy-dist with hg pull -u and then migrated over the postgres database with: sh manage_db.sh -c ./universe_wsgi.ini upgrade After restarting the server, my Galaxy instance would not show the history of datasets. The history was still there, since I could see it when I clicked "Saved Datasets" -> "View" -> "Show Structure" and jobs would be executed normally. However the history toolbar was entirely missing. Is there any fix for this other than dropping the database, deleting galaxy and clean install galaxy? (then reinstall the tools that I had downloaded from the toolshed). Note: After running sh run.sh --reload, Galaxy noted that some of the tools were not moved over, so I tried running sh ./scripts/migrate_tools/0012_tools.sh and sh ./scripts/migrate_tools/0012_tools.sh install_dependencies but I was unable to locate the scripts. Thanks, Jeremy Liu
This is usually an old cached version of the history panel interfering, or a javascript error that you'd see in the console. Can you clear browser cache, close out all Galaxy windows, and try again? If that still doesn't work, can you look in the javascript console to see if there are any errors? Dropping the database and whatnot definitely shouldn't ever be required. On Wed, Nov 5, 2014 at 3:52 PM, Jeremy Liu <jeremy.liu@yale.edu> wrote:
Hi Galaxy Dev,
I just pulled the latest updates for galaxy-dist with hg pull -u and then migrated over the postgres database with: sh manage_db.sh -c ./universe_wsgi.ini upgrade
After restarting the server, my Galaxy instance would not show the history of datasets. The history was still there, since I could see it when I clicked "Saved Datasets" -> "View" -> "Show Structure" and jobs would be executed normally. However the history toolbar was entirely missing. Is there any fix for this other than dropping the database, deleting galaxy and clean install galaxy? (then reinstall the tools that I had downloaded from the toolshed).
Note: After running sh run.sh --reload, Galaxy noted that some of the tools were not moved over, so I tried running sh ./scripts/migrate_tools/0012_tools.sh and sh ./scripts/migrate_tools/0012_tools.sh install_dependencies but I was unable to locate the scripts.
Thanks, Jeremy Liu
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I Had the same problem, after moving to stable everything is working. I know it's not a solution but for the meantime this is what I have. Best, Ofer On Wed Nov 05 2014 at 11:04:01 PM Dannon Baker <dannon.baker@gmail.com> wrote:
This is usually an old cached version of the history panel interfering, or a javascript error that you'd see in the console.
Can you clear browser cache, close out all Galaxy windows, and try again? If that still doesn't work, can you look in the javascript console to see if there are any errors?
Dropping the database and whatnot definitely shouldn't ever be required.
On Wed, Nov 5, 2014 at 3:52 PM, Jeremy Liu <jeremy.liu@yale.edu> wrote:
Hi Galaxy Dev,
I just pulled the latest updates for galaxy-dist with hg pull -u and then migrated over the postgres database with: sh manage_db.sh -c ./universe_wsgi.ini upgrade
After restarting the server, my Galaxy instance would not show the history of datasets. The history was still there, since I could see it when I clicked "Saved Datasets" -> "View" -> "Show Structure" and jobs would be executed normally. However the history toolbar was entirely missing. Is there any fix for this other than dropping the database, deleting galaxy and clean install galaxy? (then reinstall the tools that I had downloaded from the toolshed).
Note: After running sh run.sh --reload, Galaxy noted that some of the tools were not moved over, so I tried running sh ./scripts/migrate_tools/0012_tools.sh and sh ./scripts/migrate_tools/0012_tools.sh install_dependencies but I was unable to locate the scripts.
Thanks, Jeremy Liu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Hi Dannon, Clearing the browser cache worked! Thanks so much. Jeremy Liu On Thu, Nov 6, 2014 at 2:04 AM, ofer fridman <ofer.fridman@mail.huji.ac.il> wrote:
I Had the same problem, after moving to stable everything is working. I know it's not a solution but for the meantime this is what I have.
Best, Ofer
On Wed Nov 05 2014 at 11:04:01 PM Dannon Baker <dannon.baker@gmail.com> wrote:
This is usually an old cached version of the history panel interfering, or a javascript error that you'd see in the console.
Can you clear browser cache, close out all Galaxy windows, and try again? If that still doesn't work, can you look in the javascript console to see if there are any errors?
Dropping the database and whatnot definitely shouldn't ever be required.
On Wed, Nov 5, 2014 at 3:52 PM, Jeremy Liu <jeremy.liu@yale.edu> wrote:
Hi Galaxy Dev,
I just pulled the latest updates for galaxy-dist with hg pull -u and then migrated over the postgres database with: sh manage_db.sh -c ./universe_wsgi.ini upgrade
After restarting the server, my Galaxy instance would not show the history of datasets. The history was still there, since I could see it when I clicked "Saved Datasets" -> "View" -> "Show Structure" and jobs would be executed normally. However the history toolbar was entirely missing. Is there any fix for this other than dropping the database, deleting galaxy and clean install galaxy? (then reinstall the tools that I had downloaded from the toolshed).
Note: After running sh run.sh --reload, Galaxy noted that some of the tools were not moved over, so I tried running sh ./scripts/migrate_tools/0012_tools.sh and sh ./scripts/migrate_tools/0012_tools.sh install_dependencies but I was unable to locate the scripts.
Thanks, Jeremy Liu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
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Dannon Baker -
Jeremy Liu -
ofer fridman