multiple cluster job runners?
I am looking at options to configure settings such as wall-time, memory, and number of cores etc. for each tool and wondering if this can be done using multiple cluster job runner configurations. Is it possible to define multiple cluster job runner configurations for each tool? In the universe_wsgi.ini file it is mentioned that individual per-tool job runners can be specified, however I don't see any example other than 'default_cluster_job_runner'. So is there any key-value syntax for defining it in the ini file? I appreciate any comments or suggestions regarding this issue. -- Thanks, Shantanu.
Shantanu Pavgi wrote:
I am looking at options to configure settings such as wall-time, memory, and number of cores etc. for each tool and wondering if this can be done using multiple cluster job runner configurations. Is it possible to define multiple cluster job runner configurations for each tool? In the universe_wsgi.ini file it is mentioned that individual per-tool job runners can be specified, however I don't see any example other than 'default_cluster_job_runner'. So is there any key-value syntax for defining it in the ini file? I appreciate any comments or suggestions regarding this issue.
Hi Shantanu, Please have a look at the examples in the [galaxy:tool_runners] section at the bottom of universe_wsgi.ini and let us know if this suits your needs. Thanks, --nate
-- Thanks, Shantanu. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
On May 24, 2011, at 4:49 AM, Nate Coraor wrote:
Shantanu Pavgi wrote:
I am looking at options to configure settings such as wall-time, memory, and number of cores etc. for each tool and wondering if this can be done using multiple cluster job runner configurations. Is it possible to define multiple cluster job runner configurations for each tool? In the universe_wsgi.ini file it is mentioned that individual per-tool job runners can be specified, however I don't see any example other than 'default_cluster_job_runner'. So is there any key-value syntax for defining it in the ini file? I appreciate any comments or suggestions regarding this issue.
Hi Shantanu,
Please have a look at the examples in the [galaxy:tool_runners] section at the bottom of universe_wsgi.ini and let us know if this suits your needs.
Yes, that should work for me. I was wondering if I need to define job runners first and then specify it for each tool: e.g. {{{ $job_runner_one = drmaa:// -V / $job_runner_two = drmaa:// -V -l h_rt=00:10:00 / ... ... $galaxy_tool_one = $job_runner_one ... }}} But current configuration syntax should work. Thanks for the help. -- Shantanu.
Shantanu Pavgi wrote:
On May 24, 2011, at 4:49 AM, Nate Coraor wrote:
Shantanu Pavgi wrote:
I am looking at options to configure settings such as wall-time, memory, and number of cores etc. for each tool and wondering if this can be done using multiple cluster job runner configurations. Is it possible to define multiple cluster job runner configurations for each tool? In the universe_wsgi.ini file it is mentioned that individual per-tool job runners can be specified, however I don't see any example other than 'default_cluster_job_runner'. So is there any key-value syntax for defining it in the ini file? I appreciate any comments or suggestions regarding this issue.
Hi Shantanu,
Please have a look at the examples in the [galaxy:tool_runners] section at the bottom of universe_wsgi.ini and let us know if this suits your needs.
Yes, that should work for me.
I was wondering if I need to define job runners first and then specify it for each tool: e.g. {{{ $job_runner_one = drmaa:// -V / $job_runner_two = drmaa:// -V -l h_rt=00:10:00 / ... ... $galaxy_tool_one = $job_runner_one ... }}}
The syntax is different, but this should be possible. See the documentation on interpolation here: http://docs.python.org/library/configparser.html --nate
But current configuration syntax should work. Thanks for the help.
-- Shantanu.
participants (2)
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Nate Coraor -
Shantanu Pavgi