On 01/10/2012 06:31 AM, Vidya .H.K wrote:

Hi, I think macs is exceutable with galaxy user.

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what happens if you execute "macs_wrapper.py" on the command line? Regards, Hans PS: Please send all follow-up with a cc to the mailing list ("reply-all").

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On 01/09/2012 05:04 AM, Vidya .H.K wrote:

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Hi,

I am new user to galaxy. I have installed galaxy on the Linux local server for ChIP-seq analysis. While running MACS, an error is flagged "An error occurred running this job: /bin/sh: macs: not found" . I have set the path for macs in /bin. But still the error persists. It would be great if any one help me resolve this problem.

Hi Vidya

Is macs executable for the galaxy user (ie the user the galaxy server is running as) ?

Regards, Hans

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Thanks in advance.

Regards vidya

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Regards H.K.VIDYA PGDB-10-10-33 ----------------------------------------- Institute of Bioinformatics and Applied Biotechnology, Bangalore