Hello, I am having an issue on the Galaxy Main server. I had reached my maximum disk space this morning. So I cleaned out some items until my space was down to 61%. I then tried to run Tophat for RNA seq and the tool is doing nothing. I know the datasets aren't too large because I would have received an error message. The job simply goes into my queue as gray and says waiting to run. Any ideas on what is going on? Thanks, Kristen Roop
On Jun 25, 2012, at 5:25 PM, Kristen Roop wrote:
Hello,
I am having an issue on the Galaxy Main server.
I had reached my maximum disk space this morning. So I cleaned out some items until my space was down to 61%. I then tried to run Tophat for RNA seq and the tool is doing nothing. I know the datasets aren't too large because I would have received an error message. The job simply goes into my queue as gray and says waiting to run. Any ideas on what is going on?
Hi Kristen, The cluster that runs our NGS tools is extremely busy right now. Your job is waiting for a free cluster node, not because of your disk usage. Sorry for the inconvenience, and thanks for using Galaxy. --nate
Thanks,
Kristen Roop ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
The cluster was busy I think, so you just have to wait for the queue to clear... On Jun 25, 2012, at 02:25 PM, Kristen Roop <kristen.roop@gmail.com> wrote: Hello, I am having an issue on the Galaxy Main server. I had reached my maximum disk space this morning. So I cleaned out some items until my space was down to 61%. I then tried to run Tophat for RNA seq and the tool is doing nothing. I know the datasets aren't too large because I would have received an error message. The job simply goes into my queue as gray and says waiting to run. Any ideas on what is going on? Thanks, Kristen Roop ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
participants (3)
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Anthonius deBoer
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Kristen Roop
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Nate Coraor