Hi Peter, I think the tool shed would be appropriate for this... -K On Tue, May 17, 2011 at 6:23 AM, Peter Cock <p.j.a.cock@googlemail.com>wrote:

On Wed, May 4, 2011 at 9:59 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:

...

Hi all,

I mentioned just over a month ago that I had written a Galaxy tool to do find Reciprocal Best Hits (RBH) from BLAST tabular output or similar (e.g. Bill Pearson's FASTA tabular output).

http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-March/004799.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-April/004825.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-April/004829.html

The only problem I had was setting default columns, which I consider to be a minor bug in Galaxy:

https://bitbucket.org/galaxy/galaxy-central/issue/507

Regardless of this small usability issue, would the Galaxy team like to add this tool to the main distribution (to sit along with my BLAST+ wrappers), or should I submit it to the tool shed?

If you want to merge it, the following change set should suffice: https://bitbucket.org/peterjc/galaxy-central/changeset/198bf927ca30

I made a subsequent change set to test giving column defaults as value="c2" rather than value="c2" which makes no difference, but if this is how default column values are meant to be given, take this change too: https://bitbucket.org/peterjc/galaxy-central/changeset/198bf927ca30

A third commit fixes a typo in the help: https://bitbucket.org/peterjc/galaxy-central/changeset/2be6c0bc76ea

Would the Galaxy team like to merge this tool into the trunk (and if so, do you have any suggestions for improvements or changes), or should I put it up on the Galaxy Tool Shed instead?

Thanks,

Peter