No zebrafish Zv9 build
I cannot work with Zv9 data because galaxy does not seem to support it. Can you please add Zv9/danRer7 to the database/build list? Tiffany Smith
Hi Tiffany, This build is included in the public Main Galaxy instance at https://main.g2.bx.psu.edu (usegalaxy.org) and in the most current CloudMain AMI (by default). This is the full name: If you are working with a local instance, then the genome would need to be added. The original source we used is from UCSC (http://genome.ucsc.edu). You can set this up yourself, or use our indexes and loc files (as a base, edit out what you don't need, or add what extra you want). Help is here: http://wiki.galaxyproject.org/Admin/Data%20Integration http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup If you question has been misunderstood, please help to clarify and we can offer more advice, Best, Jen Galaxy team On 8/28/13 1:42 PM, Smith, Tiffany L wrote:
I cannot work with Zv9 data because galaxy does not seem to support it. Can you please add Zv9/danRer7 to the database/build list?
Tiffany Smith
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participants (2)
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Jennifer Jackson
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Smith, Tiffany L