It's up to you whether you keep it with Galaxy or not. I prefer not to
modify the Galaxy clone at all so I keep it outside. More details about
keeping the virtualenv separate can be found here in the documentation:
On Tue, Mar 1, 2016 at 1:40 PM, C. Ch. <tuto345(a)hotmail.com> wrote:
Thanks for the tip! My problem was that galaxy assumes that the venv is in
the installation directory as a hidden folder whilst I have the virtual
environment installed at ~/venv and configured in my .bashrc to launch at
login. Why I installed it like that? I don't remember... Probably to
separate the venv from the galaxy installation.
For the future, is it better to change my venv to reside in the galaxy
folder or is it of no importance where I keep it?
> Subject: Re: [galaxy-dev] Missing modules after upgrade to 16.01
> To: tuto345(a)hotmail.com; galaxy-dev(a)lists.galaxyproject.org
> From: bjoern.gruening(a)gmail.com
> Date: Tue, 1 Mar 2016 13:47:41 +0100
> please have a look at this script and run it:
> Also make sure you have samtools installed.
> Am 01.03.2016 um 13:39 schrieb C. Ch.:
> > Hi,
> > I've upgraded to 16.01 and have error messages indicating missing
> > modules. This produces problems while setting the metadata. The
> > processes run, the results are there but the history entry is in red.
> > How can I trigger the installation of all the modules that galaxy needs
> > with the new pip based mechanism?
> > Thanks for the help!
> > Cristian
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