Hi :) I'm completely new to galaxy so sorry for bothering you with maybe silly questions. I'd like to create a web service based on galaxy to process time series using clustering algorithms in order to semplify complex data into representative clusters. Our tools are python scripts that take as input a matrix containing time series, each row is a timeseries and each column a point of the time series. Usually we use CSV for files. We have files like: id|01/01/2009|02/01/2009|03/01/2009|04/01/2009 id1|5|3|3.21|8 id2|2|1|9.1|2 id3|5.2|2.43|1|4 Where the first row is the header and the others row the the id of each time series and then the time series itself. Have I to add a new datatype?Or can i use tabular? outputs and inputs are always saved on file right?and at any process are parsed again? I need then the plot of the time series and the clusters how can i do it? Thank you -- f. "E' in un giorno di pioggia che ti ho conosciuta e il vento dell'ovest rideva gentile..." (Modena City Ramblers) http://fox.noblogs.org/
Hi f: Looks like you will be trying to integrate a python script. A good place to start will be these wiki pages: http://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy http://bitbucket.org/galaxy/galaxy-central/wiki/AddToolTutorial http://bitbucket.org/galaxy/galaxy-central/wiki/AddingDatatypes anton galaxy team On Dec 24, 2009, at 5:04 AM, /fox/ wrote:
Hi :) I'm completely new to galaxy so sorry for bothering you with maybe silly questions.
I'd like to create a web service based on galaxy to process time series using clustering algorithms in order to semplify complex data into representative clusters. Our tools are python scripts that take as input a matrix containing time series, each row is a timeseries and each column a point of the time series.
Usually we use CSV for files. We have files like: id|01/01/2009|02/01/2009|03/01/2009|04/01/2009 id1|5|3|3.21|8 id2|2|1|9.1|2 id3|5.2|2.43|1|4
Where the first row is the header and the others row the the id of each time series and then the time series itself.
Have I to add a new datatype?Or can i use tabular? outputs and inputs are always saved on file right?and at any process are parsed again?
I need then the plot of the time series and the clusters how can i do it?
Thank you
-- f.
"E' in un giorno di pioggia che ti ho conosciuta e il vento dell'ovest rideva gentile..." (Modena City Ramblers)
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Anton Nekrutenko http://nekrut.bx.psu.edu http://galaxyproject.org
:O I realized only now that i've replied only to Anton and not to the list, i don't know why. My reply was: Anton Nekrutenko ha scritto:
Looks like you will be trying to integrate a python script. A good place to start will be these wiki pages
Thank you for your reply. I've read those pages but they don't explain details. I'd like some info about these questions
Have I to add a new datatype?Or can i use tabular? outputs and inputs are always saved on file right?and at any process are parsed again? I need then the plot of the time series and the clusters how can i do it?
Merry Christmas :) -- f. "E' in un giorno di pioggia che ti ho conosciuta e il vento dell'ovest rideva gentile..." (Modena City Ramblers) http://fox.noblogs.org/
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Anton Nekrutenko