Data libraries management: error on moving a dataset
Hi all, I just upgraded my version of Galaxy to the latest one. No probs with that. But in "Manage Data Libraries", the 'move this dataset' option however seems to give an error on our installation: *Not Found The resource could not be found. No action for /library_common/move_library_item* Does anyone else has this error? Cheers, Joachim -- Joachim Jacob. ------------------------------------------------------------------------ BITS logo <http://www.bits.vib.be/training> Joachim Jacob, PhD. <http://be.linkedin.com/in/joachimjacob> Bioinformatics Trainer BITS - www.bits.vib.be <http://www.bits.vib.be/> VIB - www.vib.be <http://www.vib.be/> BITSrssFeed <http://www.bits.vib.be/index.php?option=com_ninjarsssyndicator&feed_id=3&format=raw> Skype Me^(TM)! <skype:joachim.at.bits?call> Follow bitsatvib on Twitter <http://www.twitter.com/bitsatvib> VIB headquarters, Rijvisschestraat 120, BE-9052 Gent, Belgium (see map <http://maps.google.be/maps/ms?ie=UTF8&hl=nl&msa=0&msid=110984434447938768012.00047d0caa7a96a740597&ll=51.017345,3.707585&spn=0.022003,0.043731&t=h&z=15>) | Tel.: +32 9 244 66 34 | Fax.: +32 9 244 66 10
Joachim, My first inclination is that either your upgrade did, indeed, have problems, or your Galaxy environment was problematic prior to the upgrade. What happens if you type each the following in your Galaxy install dir? hg heads hg verify On Apr 28, 2011, at 11:03 AM, Joachim Jacob wrote:
Hi all,
I just upgraded my version of Galaxy to the latest one. No probs with that. But in "Manage Data Libraries", the 'move this dataset' option however seems to give an error on our installation:
Not Found
The resource could not be found. No action for /library_common/move_library_item
Does anyone else has this error?
Cheers, Joachim
-- Joachim Jacob. <logo-default.jpg> Joachim Jacob, PhD. Bioinformatics Trainer BITS - www.bits.vib.be VIB - www.vib.be <rss20.gif> <call_blue_white_124x52.png> <t_logo-a.png> VIB headquarters, Rijvisschestraat 120, BE-9052 Gent, Belgium (see map) | Tel.: +32 9 244 66 34 | Fax.: +32 9 244 66 10 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
Hi, thanks for your response! Output of '*hg verify*': checking changesets checking manifests crosschecking files in changesets and manifests checking files 5042 files, 5356 changesets, 22542 total revisions Output of '*hg heads*': changeset: 5355:50e249442c5a tag: tip user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Apr 07 08:39:07 2011 -0400 summary: Additional fix for typo propagated from manual_builds, which was updated in 5350:cd2aff5b117c. Joachim On 04/28/11 17:43, Greg Von Kuster wrote:
Joachim,
My first inclination is that either your upgrade did, indeed, have problems, or your Galaxy environment was problematic prior to the upgrade. What happens if you type each the following in your Galaxy install dir?
hg heads
hg verify
On Apr 28, 2011, at 11:03 AM, Joachim Jacob wrote:
Hi all,
I just upgraded my version of Galaxy to the latest one. No probs with that. But in "Manage Data Libraries", the 'move this dataset' option however seems to give an error on our installation:
*Not Found
The resource could not be found. No action for /library_common/move_library_item*
Does anyone else has this error?
Cheers, Joachim
-- Joachim Jacob. ------------------------------------------------------------------------ <logo-default.jpg> <http://www.bits.vib.be/training> Joachim Jacob, PhD. <http://be.linkedin.com/in/joachimjacob> Bioinformatics Trainer BITS - www.bits.vib.be <http://www.bits.vib.be/> VIB - www.vib.be <http://www.vib.be/> <rss20.gif> <http://www.bits.vib.be/index.php?option=com_ninjarsssyndicator&feed_id=3&format=raw>
<call_blue_white_124x52.png> <skype:joachim.at.bits?call> <t_logo-a.png> <http://www.twitter.com/bitsatvib>
VIB headquarters, Rijvisschestraat 120, BE-9052 Gent, Belgium (see map <http://maps.google.be/maps/ms?ie=UTF8&hl=nl&msa=0&msid=110984434447938768012.00047d0caa7a96a740597&ll=51.017345,3.707585&spn=0.022003,0.043731&t=h&z=15>) | Tel.: +32 9 244 66 34 | Fax.: +32 9 244 66 10 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu <mailto:greg@bx.psu.edu>
Hi Joachim, Your hg environment looks good, so there must be something else going on. I assume you are using only the Galaxy server for handling requests, but please confirm this. Is the following method available on line # 1972 of the file ~/lib/galaxy/web/controllers/library_common.py? def move_library_item( self, trans, cntrller, item_type, item_id, source_library_id='', make_target_current=True, **kwd ): Can you replay back with the entire paste log of the request that results in the error? Greg Von Kuster On Apr 29, 2011, at 2:43 AM, Joachim Jacob wrote:
Hi, thanks for your response!
Output of 'hg verify':
checking changesets checking manifests crosschecking files in changesets and manifests checking files 5042 files, 5356 changesets, 22542 total revisions
Output of 'hg heads':
changeset: 5355:50e249442c5a tag: tip user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Apr 07 08:39:07 2011 -0400 summary: Additional fix for typo propagated from manual_builds, which was updated in 5350:cd2aff5b117c.
Joachim
On 04/28/11 17:43, Greg Von Kuster wrote:
Joachim,
My first inclination is that either your upgrade did, indeed, have problems, or your Galaxy environment was problematic prior to the upgrade. What happens if you type each the following in your Galaxy install dir?
hg heads
hg verify
On Apr 28, 2011, at 11:03 AM, Joachim Jacob wrote:
Hi all,
I just upgraded my version of Galaxy to the latest one. No probs with that. But in "Manage Data Libraries", the 'move this dataset' option however seems to give an error on our installation:
Not Found
The resource could not be found. No action for /library_common/move_library_item
Does anyone else has this error?
Cheers, Joachim
-- Joachim Jacob. <logo-default.jpg> Joachim Jacob, PhD. Bioinformatics Trainer BITS - www.bits.vib.be VIB - www.vib.be <rss20.gif> <call_blue_white_124x52.png> <t_logo-a.png> VIB headquarters, Rijvisschestraat 120, BE-9052 Gent, Belgium (see map) | Tel.: +32 9 244 66 34 | Fax.: +32 9 244 66 10 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
Here is the problem, you must have something configured incorrectly in your apache server that is not properly handling the request.
serving Galaxy through Apache
On Apr 29, 2011, at 9:10 AM, Greg Von Kuster wrote:
Hi Joachim,
Your hg environment looks good, so there must be something else going on. I assume you are using only the Galaxy server for handling requests, but please confirm this. Is the following method available on line # 1972 of the file ~/lib/galaxy/web/controllers/library_common.py?
def move_library_item( self, trans, cntrller, item_type, item_id, source_library_id='', make_target_current=True, **kwd ):
Can you replay back with the entire paste log of the request that results in the error?
Greg Von Kuster
On Apr 29, 2011, at 2:43 AM, Joachim Jacob wrote:
Hi, thanks for your response!
Output of 'hg verify':
checking changesets checking manifests crosschecking files in changesets and manifests checking files 5042 files, 5356 changesets, 22542 total revisions
Output of 'hg heads':
changeset: 5355:50e249442c5a tag: tip user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Apr 07 08:39:07 2011 -0400 summary: Additional fix for typo propagated from manual_builds, which was updated in 5350:cd2aff5b117c.
Joachim
On 04/28/11 17:43, Greg Von Kuster wrote:
Joachim,
My first inclination is that either your upgrade did, indeed, have problems, or your Galaxy environment was problematic prior to the upgrade. What happens if you type each the following in your Galaxy install dir?
hg heads
hg verify
On Apr 28, 2011, at 11:03 AM, Joachim Jacob wrote:
Hi all,
I just upgraded my version of Galaxy to the latest one. No probs with that. But in "Manage Data Libraries", the 'move this dataset' option however seems to give an error on our installation:
Not Found
The resource could not be found. No action for /library_common/move_library_item
Does anyone else has this error?
Cheers, Joachim
-- Joachim Jacob. <logo-default.jpg> Joachim Jacob, PhD. Bioinformatics Trainer BITS - www.bits.vib.be VIB - www.vib.be <rss20.gif> <call_blue_white_124x52.png> <t_logo-a.png> VIB headquarters, Rijvisschestraat 120, BE-9052 Gent, Belgium (see map) | Tel.: +32 9 244 66 34 | Fax.: +32 9 244 66 10 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
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