job terminating on warnings from software
I have a long string of steps dying on the last step because GNUPLOT sends a warning to the log which galaxy faithfully records 11 faithful times in my history files. The 10 other files have downloadable content, and in fact, outside of galaxy the plot works. It is simply changing some intervals. How can I tell galaxy to keep going unless I get an actual error? Michael
On Friday, May 4, 2012, Michael Moore wrote:
I have a long string of steps dying on the last step because GNUPLOT sends a warning to the log which galaxy faithfully records 11 faithful times in my history files. The 10 other files have downloadable content, and in fact, outside of galaxy the plot works. It is simply changing some intervals.
How can I tell galaxy to keep going unless I get an actual error?
Michael
See http://bitbucket.org/galaxy/galaxy-central/issue/325/ allow-tool-authors-to-decide-whether-to-use-return-codes-or-stderr-for-detecting-job Peter
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Michael Moore -
Peter Cock