What image formats can be displayed in the Galaxy view panel?
Hi, I tried the pcx and ps formats, but the browser just downloads these kinds of files instead rendering them in the Galaxy window... It seems png and pdf files can be rendered in the Galaxy windows. How can I make Galaxy display other image formats like ps and pcx? Thanks, Luobin
On Thu, Feb 7, 2013 at 9:41 PM, Luobin Yang <yangluob@isu.edu> wrote:
Hi,
I tried the pcx and ps formats, but the browser just downloads these kinds of files instead rendering them in the Galaxy window... It seems png and pdf files can be rendered in the Galaxy windows. How can I make Galaxy display other image formats like ps and pcx?
Thanks, Luobin
I would guess this is possible but only if those other image types are first defined in Galaxy as new datatypes (with sensible MIME type values). Peter
Luobin - one additional minor observation: In reality, Galaxy does not do the displaying - it just sends stuff to the users' web browser for display. So even when Galaxy knows what mimetype to attach to a specific image file, the users' web browser response to that mimetype will always remain the final frontier. Not everyone uses IE where dark magic just happens :) Out of the box, many linux distributions do not enable (potentially exploitable) browser plugin viewers for PDF or SVG for example - so correctly displaying some mimetypes will always be beyond the control of the Galaxy server. EG: in 12.04 Ubuntu on my desktop using chrome or firefox, automagic pdf viewing on a 64 bit system took a fair bit of fiddling to get working - until then, even when Galaxy supplies the required mimetype, the user has to download the PDF and open it by hand. On Fri, Feb 8, 2013 at 10:16 AM, Peter Cock <p.j.a.cock@googlemail.com>wrote:
On Thu, Feb 7, 2013 at 9:41 PM, Luobin Yang <yangluob@isu.edu> wrote:
Hi,
I tried the pcx and ps formats, but the browser just downloads these kinds of files instead rendering them in the Galaxy window... It seems png and pdf files can be rendered in the Galaxy windows. How can I make Galaxy display other image formats like ps and pcx?
Thanks, Luobin
I would guess this is possible but only if those other image types are first defined in Galaxy as new datatypes (with sensible MIME type values).
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Ross & Peter, Thanks for clarifying on this! Luobin On Thu, Feb 7, 2013 at 4:36 PM, Ross <ross.lazarus@gmail.com> wrote:
Luobin - one additional minor observation: In reality, Galaxy does not do the displaying - it just sends stuff to the users' web browser for display. So even when Galaxy knows what mimetype to attach to a specific image file, the users' web browser response to that mimetype will always remain the final frontier. Not everyone uses IE where dark magic just happens :)
Out of the box, many linux distributions do not enable (potentially exploitable) browser plugin viewers for PDF or SVG for example - so correctly displaying some mimetypes will always be beyond the control of the Galaxy server. EG: in 12.04 Ubuntu on my desktop using chrome or firefox, automagic pdf viewing on a 64 bit system took a fair bit of fiddling to get working - until then, even when Galaxy supplies the required mimetype, the user has to download the PDF and open it by hand.
On Fri, Feb 8, 2013 at 10:16 AM, Peter Cock <p.j.a.cock@googlemail.com>wrote:
On Thu, Feb 7, 2013 at 9:41 PM, Luobin Yang <yangluob@isu.edu> wrote:
Hi,
I tried the pcx and ps formats, but the browser just downloads these kinds of files instead rendering them in the Galaxy window... It seems png and pdf files can be rendered in the Galaxy windows. How can I make Galaxy display other image formats like ps and pcx?
Thanks, Luobin
I would guess this is possible but only if those other image types are first defined in Galaxy as new datatypes (with sensible MIME type values).
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- +++++++++++++++++++++++++++ Luobin Yang, Ph.D. INBRE Bioinformatics Coordinator Research Assistant Professor Department of Biological Sciences, Idaho State University 921 S. 8th Ave., Stop 8007 Pocatello, ID 83209-8007 Office: 208-282-5841
participants (3)
-
Luobin Yang -
Peter Cock -
Ross