Re: [galaxy-dev] pbkdf2 encryption - disabling does not work
Ahoj Martine, thanks for your response. That was a pretty stupid mistake, hard to notice even though I program in Python. However, this has not solved my problem, I get the same error. (I have also made sure that it is in the right section.) Jan 2013/9/25 Martin Čech <emulatorer@gmail.com>
Ahoj Honzo,
Python is case-sensitive. Use 'use_pbkdf2 = False' and make sure you put it under the '[app:main]' section in the config file.
Enjoy Galaxy!
best
Martin Cech
On Wed, Sep 25, 2013 at 9:15 AM, Jan Hapala <jan@hapala.cz> wrote:
Hi,
I need to run Galaxy with ProFTPd, therefore I need to disable the PBKDF2 encryption of the passwords (as stated here http://dev.list.galaxyproject.org/disable-PBKDF2-revert-to-SHA1-td4661274.ht... ).
However, when I do add this line: use_pbkdf2 = false to the universe_wsgi.ini, restart Galaxy, submit the form for the password change (or register as a new user) I get an error "_hashlib.HASH object has no attribute __getitem__".
I got the same result with a version as of Jul 2 and the most recent tag (10411:c42567f43aa7, Aug 19).
I would be much grateful for your suggestions!
Regards, Jan
URL: http://127.0.0.1:8080/user/edit_info?cntrller=user&user_id=f2db41e1fa331b3e File '.../eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '.../lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '.../lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '.../lib/galaxy/webapps/galaxy/controllers/user.py', line 842 in edit_info trans.sa_session.flush() File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/scoping.py', line 114 in do File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1718 in flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1789 in _flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 331 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 475 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 59 in save_obj File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 485 in _emit_update_statements File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1449 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1584 in _execute_clauseelement File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1651 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1647 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/default.py', line 475 in _init_compiled File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/types.py', line 626 in process File '.../lib/galaxy/model/custom_types.py', line 125 in process_bind_param value = value[0:self.impl.length] StatementError: '_hashlib.HASH' object has no attribute '__getitem__' (original cause: TypeError: '_hashlib.HASH' object has no attribute '__getitem__') 'UPDATE galaxy_user SET update_time=%(update_time)s, password=%(password)s WHERE galaxy_user.id = %(galaxy_user_id)s' [{u'galaxy_user_id': 1, 'password': <sha1 HASH object @ 0x7338bc0>}]
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Jan, It works for me with the newest galaxy-central version. I registered new user without a problem having the pbkdf2 turned off. What version are you using now? Martin On Thu, Sep 26, 2013 at 4:02 AM, Jan Hapala <jan@hapala.cz> wrote:
Ahoj Martine,
thanks for your response. That was a pretty stupid mistake, hard to notice even though I program in Python. However, this has not solved my problem, I get the same error. (I have also made sure that it is in the right section.)
Jan
2013/9/25 Martin Čech <emulatorer@gmail.com>
Ahoj Honzo,
Python is case-sensitive. Use 'use_pbkdf2 = False' and make sure you put it under the '[app:main]' section in the config file.
Enjoy Galaxy!
best
Martin Cech
On Wed, Sep 25, 2013 at 9:15 AM, Jan Hapala <jan@hapala.cz> wrote:
Hi,
I need to run Galaxy with ProFTPd, therefore I need to disable the PBKDF2 encryption of the passwords (as stated here http://dev.list.galaxyproject.org/disable-PBKDF2-revert-to-SHA1-td4661274.ht... ).
However, when I do add this line: use_pbkdf2 = false to the universe_wsgi.ini, restart Galaxy, submit the form for the password change (or register as a new user) I get an error "_hashlib.HASH object has no attribute __getitem__".
I got the same result with a version as of Jul 2 and the most recent tag (10411:c42567f43aa7, Aug 19).
I would be much grateful for your suggestions!
Regards, Jan
URL: http://127.0.0.1:8080/user/edit_info?cntrller=user&user_id=f2db41e1fa331b3e File '.../eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '.../lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '.../lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '.../lib/galaxy/webapps/galaxy/controllers/user.py', line 842 in edit_info trans.sa_session.flush() File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/scoping.py', line 114 in do File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1718 in flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1789 in _flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 331 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 475 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 59 in save_obj File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 485 in _emit_update_statements File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1449 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1584 in _execute_clauseelement File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1651 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1647 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/default.py', line 475 in _init_compiled File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/types.py', line 626 in process File '.../lib/galaxy/model/custom_types.py', line 125 in process_bind_param value = value[0:self.impl.length] StatementError: '_hashlib.HASH' object has no attribute '__getitem__' (original cause: TypeError: '_hashlib.HASH' object has no attribute '__getitem__') 'UPDATE galaxy_user SET update_time=%(update_time)s, password=%(password)s WHERE galaxy_user.id = %(galaxy_user_id)s' [{u'galaxy_user_id': 1, 'password': <sha1 HASH object @ 0x7338bc0>}]
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
I could not find a "Galaxy version" in the application but speaking about hg, it is Aug 19 (10411:c42567f43aa7). Jan 2013/9/26 Martin Čech <marten@bx.psu.edu>
Jan,
It works for me with the newest galaxy-central version. I registered new user without a problem having the pbkdf2 turned off.
What version are you using now?
Martin
On Thu, Sep 26, 2013 at 4:02 AM, Jan Hapala <jan@hapala.cz> wrote:
Ahoj Martine,
thanks for your response. That was a pretty stupid mistake, hard to notice even though I program in Python. However, this has not solved my problem, I get the same error. (I have also made sure that it is in the right section.)
Jan
2013/9/25 Martin Čech <emulatorer@gmail.com>
Ahoj Honzo,
Python is case-sensitive. Use 'use_pbkdf2 = False' and make sure you put it under the '[app:main]' section in the config file.
Enjoy Galaxy!
best
Martin Cech
On Wed, Sep 25, 2013 at 9:15 AM, Jan Hapala <jan@hapala.cz> wrote:
Hi,
I need to run Galaxy with ProFTPd, therefore I need to disable the PBKDF2 encryption of the passwords (as stated here http://dev.list.galaxyproject.org/disable-PBKDF2-revert-to-SHA1-td4661274.ht... ).
However, when I do add this line: use_pbkdf2 = false to the universe_wsgi.ini, restart Galaxy, submit the form for the password change (or register as a new user) I get an error "_hashlib.HASH object has no attribute __getitem__".
I got the same result with a version as of Jul 2 and the most recent tag (10411:c42567f43aa7, Aug 19).
I would be much grateful for your suggestions!
Regards, Jan
URL: http://127.0.0.1:8080/user/edit_info?cntrller=user&user_id=f2db41e1fa331b3e File '.../eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '.../lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '.../lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '.../lib/galaxy/webapps/galaxy/controllers/user.py', line 842 in edit_info trans.sa_session.flush() File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/scoping.py', line 114 in do File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1718 in flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1789 in _flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 331 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 475 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 59 in save_obj File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 485 in _emit_update_statements File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1449 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1584 in _execute_clauseelement File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1651 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1647 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/default.py', line 475 in _init_compiled File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/types.py', line 626 in process File '.../lib/galaxy/model/custom_types.py', line 125 in process_bind_param value = value[0:self.impl.length] StatementError: '_hashlib.HASH' object has no attribute '__getitem__' (original cause: TypeError: '_hashlib.HASH' object has no attribute '__getitem__') 'UPDATE galaxy_user SET update_time=%(update_time)s, password=%(password)s WHERE galaxy_user.id = %(galaxy_user_id)s' [{u'galaxy_user_id': 1, 'password': <sha1 HASH object @ 0x7338bc0>}]
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Jan, I just ran it on pure galaxy-dist (https://bitbucket.org/galaxy/galaxy-dist) and it runs OK. I recommend you updating your Galaxy instance towards tip of the galaxy-dist. Martin On Thu, Sep 26, 2013 at 3:54 PM, Jan Hapala <jan@hapala.cz> wrote:
I could not find a "Galaxy version" in the application but speaking about hg, it is Aug 19 (10411:c42567f43aa7). Jan
2013/9/26 Martin Čech <marten@bx.psu.edu>
Jan,
It works for me with the newest galaxy-central version. I registered new user without a problem having the pbkdf2 turned off.
What version are you using now?
Martin
On Thu, Sep 26, 2013 at 4:02 AM, Jan Hapala <jan@hapala.cz> wrote:
Ahoj Martine,
thanks for your response. That was a pretty stupid mistake, hard to notice even though I program in Python. However, this has not solved my problem, I get the same error. (I have also made sure that it is in the right section.)
Jan
2013/9/25 Martin Čech <emulatorer@gmail.com>
Ahoj Honzo,
Python is case-sensitive. Use 'use_pbkdf2 = False' and make sure you put it under the '[app:main]' section in the config file.
Enjoy Galaxy!
best
Martin Cech
On Wed, Sep 25, 2013 at 9:15 AM, Jan Hapala <jan@hapala.cz> wrote:
Hi,
I need to run Galaxy with ProFTPd, therefore I need to disable the PBKDF2 encryption of the passwords (as stated here http://dev.list.galaxyproject.org/disable-PBKDF2-revert-to-SHA1-td4661274.ht... ).
However, when I do add this line: use_pbkdf2 = false to the universe_wsgi.ini, restart Galaxy, submit the form for the password change (or register as a new user) I get an error "_hashlib.HASH object has no attribute __getitem__".
I got the same result with a version as of Jul 2 and the most recent tag (10411:c42567f43aa7, Aug 19).
I would be much grateful for your suggestions!
Regards, Jan
URL: http://127.0.0.1:8080/user/edit_info?cntrller=user&user_id=f2db41e1fa331b3e File '.../eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '.../eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '.../lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '.../lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '.../lib/galaxy/webapps/galaxy/controllers/user.py', line 842 in edit_info trans.sa_session.flush() File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/scoping.py', line 114 in do File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1718 in flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/session.py', line 1789 in _flush File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 331 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/unitofwork.py', line 475 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 59 in save_obj File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/orm/persistence.py', line 485 in _emit_update_statements File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1449 in execute File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1584 in _execute_clauseelement File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1651 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py', line 1647 in _execute_context File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/engine/default.py', line 475 in _init_compiled File '.../eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/types.py', line 626 in process File '.../lib/galaxy/model/custom_types.py', line 125 in process_bind_param value = value[0:self.impl.length] StatementError: '_hashlib.HASH' object has no attribute '__getitem__' (original cause: TypeError: '_hashlib.HASH' object has no attribute '__getitem__') 'UPDATE galaxy_user SET update_time=%(update_time)s, password=%(password)s WHERE galaxy_user.id = %(galaxy_user_id)s' [{u'galaxy_user_id': 1, 'password': <sha1 HASH object @ 0x7338bc0>}]
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
Jan Hapala -
Martin Čech