...and indeed adding it to the "whitelist"
(~/galaxy_dev/8090/galaxy/lib/galaxy/tools/_init__.py
solves the problem. I can keep 'preserve_python_environment = legacy_only'
I have made a pull request.
Hans-Rudolf
On 03/27/2017 04:38 PM, Hans-Rudolf Hotz wrote:
Hi All
I am in the process of updating our local galaxy servers to release 17.01.
Using the new release, I get the following error, when I try to display
a simple bed file in trackster:
Traceback (most recent call last):
File
"/***/galaxy_dev/***/galaxy/lib/galaxy/datatypes/converters/interval_to_fli.py",
line 20, in
from galaxy.datatypes.util.gff_util import
convert_gff_coords_to_bed, GFFReaderWrapper, read_unordered_gtf
ImportError: No module named galaxy.datatypes.util.gff_util
When change 'preserve_python_environment = legacy_only' to
'preserve_python_environment = always' in "galaxy.ini" it works.
Looks like more tools need to be added to the "whitelist" ?
Regards, Hans-Rudolf