<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#>
Hi all, after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports. It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error): URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13 Module paste.exceptions.errormiddleware:*144* in __call__ body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* template*.*render*(* ****data *)* Module mako.template:*296* in render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs*)* Module mako.runtime:*718* in _exec_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
Hi Nikos, Thank you so much for your report. This issue should be fixed now. Please update your revision and try again. Thanks, Sam On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos <nikos.sidiro@gmail.com>wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#>
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13 Module paste.exceptions.errormiddleware:*144* in __call__ body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* template*.*render*(* ****data *)* Module mako.template:*296* in render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs *)* Module mako.runtime:*718* in _exec_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Sam, thank you for the quick reply but I can't seem to find the revision, or maybe don't know how to pull it. I tried to check galaxy-dist on BitBucket but couldn't find any updates related to Galaxy Reports. Bests, Nikos 2014-02-13 17:35 GMT+01:00 sam guerler <aysam.guerler@gmail.com>:
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#>
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13 Module paste.exceptions.errormiddleware:*144* in __call__ body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* template*.*render*(* ****data *)* Module mako.template:*296* in render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs *)* Module mako.runtime:*718* in _exec_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi, this has been resolved in galaxy-central repo (not dist). You can apply the patch manualy, it is less than one-liner. https://bitbucket.org/galaxy/galaxy-central/commits/3691fd3e12ef8160ae993cef... Martin On Fri, Feb 14, 2014 at 1:28 PM, Nikos Sidiropoulos <nikos.sidiro@gmail.com>wrote:
Hi Sam,
thank you for the quick reply but I can't seem to find the revision, or maybe don't know how to pull it.
I tried to check galaxy-dist on BitBucket but couldn't find any updates related to Galaxy Reports.
Bests, Nikos
2014-02-13 17:35 GMT+01:00 sam guerler <aysam.guerler@gmail.com>:
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#>
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13 Module paste.exceptions.errormiddleware:*144* in __call__ body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* template*.*render*(* ****data *)* Module mako.template:*296* in render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs *)* Module mako.runtime:*718* in _exec_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Thanks so much Martin! 2014-02-14 19:32 GMT+01:00 Martin Čech <marten@bx.psu.edu>:
Hi,
this has been resolved in galaxy-central repo (not dist). You can apply the patch manualy, it is less than one-liner.
https://bitbucket.org/galaxy/galaxy-central/commits/3691fd3e12ef8160ae993cef...
Martin
On Fri, Feb 14, 2014 at 1:28 PM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi Sam,
thank you for the quick reply but I can't seem to find the revision, or maybe don't know how to pull it.
I tried to check galaxy-dist on BitBucket but couldn't find any updates related to Galaxy Reports.
Bests, Nikos
2014-02-13 17:35 GMT+01:00 sam guerler <aysam.guerler@gmail.com>:
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#>
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13 Module paste.exceptions.errormiddleware:*144* in __call__ body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
<http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__ <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* template*.*render*(* ****data *)* Module mako.template:*296* in render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data *)* Module mako.runtime:*660* in _render <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=* kwargs*)* Module mako.runtime:*718* in _exec_template <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> __M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default <http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#> *raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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participants (3)
-
Martin Čech -
Nikos Sidiropoulos -
sam guerler