Sorry for the delayed response on this - I just wanted to confirm that yes Galaxy does this for uploaded files (if tools produce these line endings we would not touch those). I believe this can be disabled by clicking on the settings icon for a particular upload row in the upload form and unchecking "Use POSIX standard". -John On Thu, Feb 9, 2017 at 8:58 AM, Lawrence, Cris W <crisl@upenn.edu> wrote:

I have observed that when I upload a file with CRLF line endings into Galaxy and then later download it, the endings have changed to UNIX (LF only). I also observed that an uploaded file containing CR only line endings in Galaxy downloads to a file again with LF only line endings. These file types are txt. Just want to confirm - does Galaxy scrub line endings?

- Cris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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