From: galaxy-dev-bounces ... On Behalf Of Adam Brenner
On our HPC setup, we use the modules system but its the same issue you are
Another vote for the excellent modules system from us at AgResearch. I think it's the
only sane way to manage PATH, etc, when you have multiple versions of tools installed.
I know I've said this before here. Tell all your friends. ;-)
A number of methods exists for setting up the correct path, for you,
believe the easiest would be one of the two:
1) In your init script: source (or setup) PATHS as you have them in your
2) Within Galaxy, edit universe_wsgi.ini and look for:
and create a file that will setup the correct $PATH for you.
We use (2), which is better than (1), as it will continue to work when you start running
your jobs on a cluster, whereas the PATH you set in (1) will not be picked up on the
cluster (as far as I remember from our early experience).
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