Hi all, I just uploaded a (Sanger) FASTQ file without specifying the format. Galaxy therefore treats it as "fastq". Some tools are happy to take this as input, but not the fastq_to_tabular converter. Please consider applying the following trivial patch: --- a/tools/fastq/fastq_to_tabular.xml Wed Nov 17 16:24:12 2010 -0500 +++ b/tools/fastq/fastq_to_tabular.xml Mon Dec 13 16:52:51 2010 +0000 @@ -2,7 +2,7 @@ <description>converter</description> <command interpreter="python">fastq_to_tabular.py '$input_file' '$output_file' '${input_file.extension[len( 'fastq' ):]}'</command> <inputs> - <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa" label="FASTQ file to convert" /> + <param name="input_file" type="data" format="fastq,fastqsanger,fastqcssanger,fastqillumina,fastqsolexa" label="FASTQ file to convert" /> </inputs> <outputs> <data name="output_file" format="tabular" /> Thanks, Peter