Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully. Thanks in advance. Regards, Marija Mag. Marija Đurđević Core Facility Computational Bioanalytics Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria Phone: +43 316/385-73024 Fax:+43 316/385-73009 Email: marija.djurdjevic@medunigraz.at Email: marija.djurdjevic@klinikum-graz.at Web: https://zmf.medunigraz.at/
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters... Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote:
Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance.
Regards,
Marija
*Mag. Marija Đurđević*
Core Facility Computational Bioanalytics
Medical University of Graz
Center for Medical Research
Stiftingtalstraße 24, A-8010 Graz
Austria
Phone: +43 316/385-73024
Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at
Email: marija.djurdjevic@klinikum-graz.at
**
Web: https://zmf.medunigraz.at/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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Dear Nicola, Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file: <?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base> <bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator> <authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth> And Thank you for your help. Regards, Marija From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters... Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully. Thanks in advance. Regards, Marija Mag. Marija Đurđević Core Facility Computational Bioanalytics Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria Phone: +43 316/385-73024 Fax:+43 316/385-73009 Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz.at> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum-graz.at> Web: https://zmf.medunigraz.at/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Marija, try to change to this: <search-filter>(uid={username})</search-filter> and/or: <bind-user>{dn}</bind-user> and let us know if you still have errors (please attach the sanitized logs). Cheers, Nicola On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz.at> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum-graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
Dear Nicola, Thank you very much for your help, I appreciate it a lot. With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file. I changed configuration to : <?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator> <authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth> And error in log file is: galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0) -----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification Hi Marija, try to change to this: <search-filter>(uid={username})</search-filter> and/or: <bind-user>{dn}</bind-user> and let us know if you still have errors (please attach the sanitized logs). Cheers, Nicola On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz.at> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum-graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
Hi Marija, does it work without <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> ? Cheers, Nicola On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz.at> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum-graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
No, I got the same error message :( -----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification Hi Marija, does it work without <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> ? Cheers, Nicola On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz.a t> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum- graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
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What is your LDAP server software? OpenLDAP or something else? Cheers, Nicola On 01/06/16 15:14, Durdevic, Marija wrote:
No, I got the same error message :(
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, does it work without
<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
?
Cheers, Nicola
On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz.a t> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum- graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
Hi Nicola, The server is eDirectory. But this should not have any effect on LDAP authentication as the protocol is standardized, as they told me from administration support. Cheers, Marija -----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:21 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification What is your LDAP server software? OpenLDAP or something else? Cheers, Nicola On 01/06/16 15:14, Durdevic, Marija wrote:
No, I got the same error message :(
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, does it work without
<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
?
Cheers, Nicola
On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz. a t> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum - graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
Hi Marija, thanks for the info, I suspect that eDirectory may not implement the "Who Am I?" LDAP extended operation, defined in RFC 4532, see: https://www.python-ldap.org/doc/html/ldap.html#ldap.LDAPObject.whoami_s Can you check (or have your sysadmins check) the logs of the eDirectory server? I don't have any other idea, sorry! Cheers, Nicola On 02/06/16 09:24, Durdevic, Marija wrote:
Hi Nicola,
The server is eDirectory. But this should not have any effect on LDAP authentication as the protocol is standardized, as they told me from administration support.
Cheers, Marija
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:21 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
What is your LDAP server software? OpenLDAP or something else?
Cheers, Nicola
On 01/06/16 15:14, Durdevic, Marija wrote:
No, I got the same error message :(
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, does it work without
<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
?
Cheers, Nicola
On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz. a t> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@klinikum - graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
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To search Galaxy mailing lists use the unified search at:
Dear Nicola, Thank you very much for your time and help. I will see with my administrators how to solve this issue. Regards, Marija -----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Thursday, June 02, 2016 12:51 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification Hi Marija, thanks for the info, I suspect that eDirectory may not implement the "Who Am I?" LDAP extended operation, defined in RFC 4532, see: https://www.python-ldap.org/doc/html/ldap.html#ldap.LDAPObject.whoami_s Can you check (or have your sysadmins check) the logs of the eDirectory server? I don't have any other idea, sorry! Cheers, Nicola On 02/06/16 09:24, Durdevic, Marija wrote:
Hi Nicola,
The server is eDirectory. But this should not have any effect on LDAP authentication as the protocol is standardized, as they told me from administration support.
Cheers, Marija
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:21 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
What is your LDAP server software? OpenLDAP or something else?
Cheers, Nicola
On 01/06/16 15:14, Durdevic, Marija wrote:
No, I got the same error message :(
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, does it work without
<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
?
Cheers, Nicola
On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz. a t> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@kliniku m - graz.at>
Web: https://zmf.medunigraz.at/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
Dear Nicola, I arranged with my IT administration office to use their AD for LDAP. I correct my auth_conf.xml file. Authentication was successful, but I got error message in Galaxy client side: No such user or invalid password And user is not created in the database. Galaxy Log file is: galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,077 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,077 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,078 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'cn,mail', 'login-use-username': 'False', 'allow-register': 'False', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap:server.com', 'auto-register': 'True', 'search-base': 'OU=pers,OU=usr,DC=mga,DC=server,DC=com', 'search-filter': '(|(mail={email})(cn={username}))', 'continue-on-failure': 'False', 'auto-register-username': '{cn}', 'search-password': 'password', 'search-user': 'CN=AD Read,CN=Users,DC=mgd,DC=server,DC=com', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,130 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,146 LDAP authenticate: dn is CN=o_durdevic,OU=pers,OU=usr,DC=mgd,DC=server,DC=com galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,146 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'cn': ['o_durdevic']} galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,154 MY_LOG: (97, [], 2, []) galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,155 LDAP authenticate: whoami is u:MGD\o_durdevic galaxy.auth.providers.ldap_ad DEBUG 2016-06-03 12:09:20,155 LDAP authentication successful 10.17.16.180 - - [03/Jun/2016:12:09:20 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 1985|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Fri Jun 3 12:09:20 2016] POST /user/login?use_panels=False => generated 5018 bytes in 144 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0) Any solution? Regards, Marija -----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Thursday, June 02, 2016 12:51 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification Hi Marija, thanks for the info, I suspect that eDirectory may not implement the "Who Am I?" LDAP extended operation, defined in RFC 4532, see: https://www.python-ldap.org/doc/html/ldap.html#ldap.LDAPObject.whoami_s Can you check (or have your sysadmins check) the logs of the eDirectory server? I don't have any other idea, sorry! Cheers, Nicola On 02/06/16 09:24, Durdevic, Marija wrote:
Hi Nicola,
The server is eDirectory. But this should not have any effect on LDAP authentication as the protocol is standardized, as they told me from administration support.
Cheers, Marija
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:21 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
What is your LDAP server software? OpenLDAP or something else?
Cheers, Nicola
On 01/06/16 15:14, Durdevic, Marija wrote:
No, I got the same error message :(
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 4:11 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, does it work without
<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
?
Cheers, Nicola
On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,
Thank you very much for your help, I appreciate it a lot.
With recommended changes, I am getting just error message in Galaxy web-app: No such user or invalid password. There is no error msg in log file.
I changed configuration to :
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>True</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap. mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>False</login-use-username> <continue-on-failure>True</continue-on-failure> <search-fields>uid,mail</search-fields> <search-filter>(mail={email})</search-filter> <search-base>ou=pers,ou=usr,o=mcp</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And error in log file is:
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP authenticate: email is marija.durdevic@medunigraz.at galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user': '{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False', 'allow-register': 'True', 'ldap-options': 'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email': '{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register': 'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter': '(mail={email})', 'continue-on-failure': 'True', 'auto-register-username': '{uid}', 'bind-password': '{password}', 'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3 galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP authenticate: search attributes are {'mail': ['marija.durdevic@medunigraz.at'], 'uid': ['o_durdevic']} galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP authenticate: bind exception Traceback (most recent call last): File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate whoami = l.whoami_s() File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 641, in whoami_s return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py", line 106, in _ldap_call result = func(*args,**kwargs) PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc': 'Protocol error'} 10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - "https://galaxy.medunigraz.at/user/login?use_panels=False" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36" [pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes} [Wed Jun 1 15:13:28 2016] POST /user/login?use_panels=False => generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73 bytes (1 switches on core 0)
-----Original Message----- From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 2:56 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, try to change to this:
<search-filter>(uid={username})</search-filter>
and/or:
<bind-user>{dn}</bind-user>
and let us know if you still have errors (please attach the sanitized logs).
Cheers, Nicola
On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,
Thank you for response. I am having all those information, and I am following sample file, but still unsuccessfully. Here is my auth_conf file:
<?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <filter>'{email}'.endswith('@mycompany.com')</filter> <options> <allow-register>False</allow-register> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.mycompany.com</server> <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-fields>uid, mail</search-fields> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-base>ou=pers,ou=usr,o=com</search-base>
<bind-user>{email}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{email}</auto-register-email> </options> </authenticator>
<authenticator> <type>localdb</type> <options> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth>
And
Thank you for your help.
Regards, Marija
From: Nicola Soranzo [mailto:nicola.soranzo@gmail.com] On Behalf Of Nicola Soranzo Sent: Wednesday, June 01, 2016 12:47 PM To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] LDAP authentification
Hi Marija, LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample contains example and documentation that should help you, but you still need to know the necessary details about how LDAP authentication works on your network, e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and bind parameters...
Cheers, Nicola On 31/05/16 14:20, Durdevic, Marija wrote: Can someone please be so kind to post auth_conf.xml file with all changes. I am trying to setup it, but unsuccessfully.
Thanks in advance. Regards, Marija
Mag. Marija Đurđević Core Facility Computational Bioanalytics
Medical University of Graz Center for Medical Research Stiftingtalstraße 24, A-8010 Graz Austria
Phone: +43 316/385-73024 Fax:+43 316/385-73009
Email: marija.djurdjevic@medunigraz.at<mailto:marija.djurdjevic@medunigraz. a t> Email: marija.djurdjevic@klinikum-graz.at<mailto:marija.djurdjevic@kliniku m - graz.at>
Web: https://zmf.medunigraz.at/
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participants (2)
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Durdevic, Marija -
Nicola Soranzo