updating ToolsMultipleOutput wiki docs new additional datasets file format to include database part
Hi, In the last section of https://bitbucket.org/galaxy/galaxy-central/wiki/ToolsMultipleOutput, "Number of output datasets cannot be determined until tool run", it should be updated that the new additional datasets file format actually has a sixth part at the end where you can set the database attribute of the output dataset: "%s_%s_%s_%s_%s_%s" % ( 'primary', output1.id, name, 'visible', file_type, database ) I accidentally discovered this even though I didn't want to set the database attribute because I have some custom datatypes defined and my datatype extension names have underscores in them :) which causes Galaxy to think that the part of my extension names string after the underscore is actually the database name i want to set. I would recommend not to put underscores in your custom datatype extension names :) -Leandro
Leandro Hermida wrote:
Hi,
In the last section of https://bitbucket.org/galaxy/galaxy-central/wiki/ToolsMultipleOutput, "Number of output datasets cannot be determined until tool run", it should be updated that the new additional datasets file format actually has a sixth part at the end where you can set the database attribute of the output dataset:
"%s_%s_%s_%s_%s_%s" % ( 'primary', output1.id, name, 'visible', file_type, database )
I accidentally discovered this even though I didn't want to set the database attribute because I have some custom datatypes defined and my datatype extension names have underscores in them :) which causes Galaxy to think that the part of my extension names string after the underscore is actually the database name i want to set.
I would recommend not to put underscores in your custom datatype extension names :)
Hi Leandro, Thanks for the heads up, I've fixed the wiki page. --nate
-Leandro
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participants (2)
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Leandro Hermida
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Nate Coraor