Roxanne Tapia wrote:

Hi,

I was going through the examples in the README, and everything went along fine until I tried to upload files from the import directory:

usage: library_upload_from_import_dir.py key url folder_id file_type server_dir dbkey

I don't understand what the last two arguments 'server_dir' and 'dbkey' represent, or how to determine the correct values to pass along.

I can, however, successfully upload via the import dir from the webapp.

Any help would be appreciated,

Hi Roxanne, server_dir is the name of the directory underneath your configured 'library_import_dir' in the Galaxy config file from which you would like to import. In the UI, these names appear in a drop-down list. The dbkey is the "key" of the genome build that should be associated with the data you're importing (e.g. 'hg18'), the full list of which is also available on the UI upload page. --nate

Roxanne Tapia Software Developer 3 B-6, Genome Science Bioscience Division LANL

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