Error starting Galaxy after upgrade.
Hi, I upgraded Galaxy to the latest version using the command: "hg pull -u", then when I run "sh run.sh" I got the following error messages: Initializing openid_conf.xml from openid_conf.xml.sample Initializing tool-data/bowtie2_indices.loc from bowtie2_indices.loc.sample Some eggs are out of date, attempting to fetch... Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 30, in <module> c.resolve() # Only fetch eggs required by the config File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args[0], e.args[1] ) File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/usr/lib/python2.6/dist-packages/pkg_resources.py", line 546, in resolve raise DistributionNotFound(req) pkg_resources.DistributionNotFound: mercurial==2.1.2 Fetch failed. What happened here? Thanks, Luobin
On May 30, 2012, at 7:18 PM, Luobin Yang wrote:
Hi,
I upgraded Galaxy to the latest version using the command: "hg pull -u", then when I run "sh run.sh" I got the following error messages:
Initializing openid_conf.xml from openid_conf.xml.sample Initializing tool-data/bowtie2_indices.loc from bowtie2_indices.loc.sample Some eggs are out of date, attempting to fetch... Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 30, in <module> c.resolve() # Only fetch eggs required by the config File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args[0], e.args[1] ) File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/usr/lib/python2.6/dist-packages/pkg_resources.py", line 546, in resolve raise DistributionNotFound(req) pkg_resources.DistributionNotFound: mercurial==2.1.2 Fetch failed.
What happened here?
Hi Luobin, This was most likely due to our recent downtime from an environmental failure in our data center. Please let us know if you're still having problems fetching the mercurial egg. --nate
Thanks, Luobin ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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Luobin Yang
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Nate Coraor