Giardine et al Galaxy paper (2005)
Hi everyone The Galaxy system as described in Belinda Giardine et al's 2005 Genome Research paper ("Galaxy: A platform for interactive large-scale genome analysis") appears to be radically different from the current Galaxy, at least in its technical specification. The paper mentions a C core spoken to by a Perl-based web user interface (referred to as the History User Interface). The co-authors on the paper are, however, familiar names from the current Galaxy team. Was this paper describing something in the pre-history of current Galaxy (it sounds rather like the current History but without workflows and of course implemented on a different platform)? Peter
Hi Peter Have a look at Anton's talk "Introduction to Galaxy" at last years GCC meeting: http://wiki.g2.bx.psu.edu/Events/GCC2011 The first few slides are talking about the history of Galaxy, eg: "Galaxy as a single Perl script (!)" Regards, Hans On 06/12/2012 01:28 PM, Peter van Heusden wrote:
Hi everyone
The Galaxy system as described in Belinda Giardine et al's 2005 Genome Research paper ("Galaxy: A platform for interactive large-scale genome analysis") appears to be radically different from the current Galaxy, at least in its technical specification. The paper mentions a C core spoken to by a Perl-based web user interface (referred to as the History User Interface). The co-authors on the paper are, however, familiar names from the current Galaxy team. Was this paper describing something in the pre-history of current Galaxy (it sounds rather like the current History but without workflows and of course implemented on a different platform)?
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
And Galaxy had a predecessor called Gala, probably also implemented in perl. Belinda may also have published a paper about Gala. Bob H On Jun 12, 2012, at 8:36 AM, Hans-Rudolf Hotz wrote:
Hi Peter
Have a look at Anton's talk "Introduction to Galaxy" at last years GCC meeting: http://wiki.g2.bx.psu.edu/Events/GCC2011
The first few slides are talking about the history of Galaxy, eg:
"Galaxy as a single Perl script (!)"
Regards, Hans
On 06/12/2012 01:28 PM, Peter van Heusden wrote:
Hi everyone
The Galaxy system as described in Belinda Giardine et al's 2005 Genome Research paper ("Galaxy: A platform for interactive large-scale genome analysis") appears to be radically different from the current Galaxy, at least in its technical specification. The paper mentions a C core spoken to by a Perl-based web user interface (referred to as the History User Interface). The co-authors on the paper are, however, familiar names from the current Galaxy team. Was this paper describing something in the pre-history of current Galaxy (it sounds rather like the current History but without workflows and of course implemented on a different platform)?
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
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Bob Harris -
Hans-Rudolf Hotz -
Peter van Heusden