Hello Rene,

Details about how to configure Galaxy to work with a local UCSC Genome browser mirror can be found in these archived mailing list responses.

http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003658.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003659.html

We are working to update the wiki with the information. Please let us know if you need more help linking the two together.

Thanks for using Galaxy!

Jen Galaxy team

On 11/16/10 8:15 AM, Rene Dreos (JIC) wrote:

Dear Developer

my institute would like to run a local version of Galaxy and I managed to properly install it on my mac. We are focused on plant and especially on Arabidopsis. I managed to upgrade our local Galaxy with Arabidopsis genome and I am able to run some analysis (ChIP-seq) from mapping to peak detection with MACS. The next step would be to visualize the results on UCSC genome browser. We have a local version of it (with the latest Arabidopsis genome assembly) but MACS result hasn't got any link to UCSC GB but only to GeneTrack (that is not working). How can I make Galaxy aware of our local GB?

thank you very much kind regard r _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev