Dear Developers, I could see the visualize icon in the History page below the output file.. Actually i am trying to plot the graph between the column 4 and 8 from the output.. I tried using the visualize option, But takes long time to and i could'nt get the plot.. Please suggest , how to get the Scatter plot your suggestions are very much appericiated.. Thanks Sridhar
Hello, Sridhar How large is the file you're trying to plot? The scatterplot visualization doesn't do well with large datasets (more than ~10,000 points). I'm working to provide some form of pagination, but it may take some time. If your file is large, filtering or splitting up your data may help in the meantime. If that doesn't help, can you provide more details as to what's happening when you click the draw button? Thanks, Carl On Thu, Jul 11, 2013 at 5:22 AM, sridhar srinivasan < sridhar2bioinfo@gmail.com> wrote:
Dear Developers,
I could see the visualize icon in the History page below the output file.. Actually i am trying to plot the graph between the column 4 and 8 from the output..
I tried using the visualize option, But takes long time to and i could'nt get the plot..
Please suggest , how to get the Scatter plot
your suggestions are very much appericiated..
Thanks Sridhar
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Hello Carl, Thanks for the reply. My file 9094 line its cuffdiff output.. After clicking the draw button it keep on shows rendering.. Thanks Sridhar On Thu, Jul 11, 2013 at 7:37 PM, Carl Eberhard <carlfeberhard@gmail.com>wrote:
Hello, Sridhar
How large is the file you're trying to plot?
The scatterplot visualization doesn't do well with large datasets (more than ~10,000 points). I'm working to provide some form of pagination, but it may take some time.
If your file is large, filtering or splitting up your data may help in the meantime.
If that doesn't help, can you provide more details as to what's happening when you click the draw button?
Thanks, Carl
On Thu, Jul 11, 2013 at 5:22 AM, sridhar srinivasan < sridhar2bioinfo@gmail.com> wrote:
Dear Developers,
I could see the visualize icon in the History page below the output file.. Actually i am trying to plot the graph between the column 4 and 8 from the output..
I tried using the visualize option, But takes long time to and i could'nt get the plot..
Please suggest , how to get the Scatter plot
your suggestions are very much appericiated..
Thanks Sridhar
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
The 'rendering' message never goes away then? Are you able to open a javascript console and try to reload the page then re-render the plot? (You can access the console in Firefox by using the menu: Tools->Web Developer-> Web console. In Chrome, it's View-> Developer-> Javascript console.) Do you see any output or errors when the console is turned on and the you've reloaded and re-rendered? Which version of Galaxy are you using? Thanks for the info, Carl On Fri, Jul 12, 2013 at 12:00 AM, sridhar srinivasan < sridhar2bioinfo@gmail.com> wrote:
Hello Carl, Thanks for the reply.
My file 9094 line its cuffdiff output.. After clicking the draw button it keep on shows rendering..
Thanks Sridhar
On Thu, Jul 11, 2013 at 7:37 PM, Carl Eberhard <carlfeberhard@gmail.com>wrote:
Hello, Sridhar
How large is the file you're trying to plot?
The scatterplot visualization doesn't do well with large datasets (more than ~10,000 points). I'm working to provide some form of pagination, but it may take some time.
If your file is large, filtering or splitting up your data may help in the meantime.
If that doesn't help, can you provide more details as to what's happening when you click the draw button?
Thanks, Carl
On Thu, Jul 11, 2013 at 5:22 AM, sridhar srinivasan < sridhar2bioinfo@gmail.com> wrote:
Dear Developers,
I could see the visualize icon in the History page below the output file.. Actually i am trying to plot the graph between the column 4 and 8 from the output..
I tried using the visualize option, But takes long time to and i could'nt get the plot..
Please suggest , how to get the Scatter plot
your suggestions are very much appericiated..
Thanks Sridhar
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
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Carl Eberhard -
sridhar srinivasan