details: http://www.bx.psu.edu/hg/galaxy/rev/03dbef081cf2 changeset: 3428:03dbef081cf2 user: Nate Coraor <nate@bx.psu.edu> date: Tue Feb 23 16:12:20 2010 -0500 description: update buildbot_setup.sh for new data location diffstat: buildbot_setup.sh | 47 ++++++++++++++++++++++++++--------------------- 1 files changed, 26 insertions(+), 21 deletions(-) diffs (73 lines): diff -r 6dbe31bbbf02 -r 03dbef081cf2 buildbot_setup.sh --- a/buildbot_setup.sh Tue Feb 23 15:14:28 2010 -0500 +++ b/buildbot_setup.sh Tue Feb 23 16:12:20 2010 -0500 @@ -19,31 +19,34 @@ done [ ! -d "$HYPHY" ] && unset HYPHY ;; + solaris2.10) + HYPHY="/galaxy/software/linux2.6-x86_64/hyphy" + ;; esac LINKS=" -/depot/data2/galaxy/alignseq.loc -/depot/data2/galaxy/annotation_profiler/annotation_profiler.loc -/depot/data2/galaxy/annotation_profiler/annotation_profiler_options.xml -/depot/data2/galaxy/annotation_profiler/annotation_profiler_valid_builds.txt -/depot/data2/galaxy/binned_scores.loc -/depot/data2/galaxy/blastdb.loc -/depot/data2/galaxy/bowtie_indices.loc -/depot/data2/galaxy/bowtie_indices_color.loc -/depot/data2/galaxy/bwa_index.loc -/depot/data2/galaxy/encode_datasets.loc +/galaxy/data/location/alignseq.loc +/galaxy/data/annotation_profiler/annotation_profiler.loc +/galaxy/data/annotation_profiler/annotation_profiler_options.xml +/galaxy/data/annotation_profiler/annotation_profiler_valid_builds.txt +/galaxy/data/location/binned_scores.loc +/galaxy/data/location/blastdb.loc +/galaxy/data/location/bowtie_indices.loc +/galaxy/data/location/bowtie_indices_color.loc +/galaxy/data/location/bwa_index.loc +/galaxy/data/location/encode_datasets.loc /galaxy/home/universe/encode_feature_partitions -/depot/data2/galaxy/lastz_seqs.loc -/depot/data2/galaxy/liftOver.loc -/depot/data2/galaxy/maf_index.loc -/depot/data2/galaxy/maf_pairwise.loc -/depot/data2/galaxy/microbes/microbial_data.loc -/depot/data2/galaxy/phastOdds.loc -/depot/data2/galaxy/quality_scores.loc -/depot/data2/galaxy/regions.loc -/depot/data2/galaxy/sam_fa_indices.loc -/depot/data2/galaxy/taxonomy -/depot/data2/galaxy/twobit.loc +/galaxy/data/location/lastz_seqs.loc +/galaxy/data/location/liftOver.loc +/galaxy/data/location/maf_index.loc +/galaxy/data/location/maf_pairwise.loc +/galaxy/data/location/microbes/microbial_data.loc +/galaxy/data/location/phastOdds.loc +/galaxy/data/location/quality_scores.loc +/galaxy/data/location/regions.loc +/galaxy/data/location/sam_fa_indices.loc +/galaxy/data/location/taxonomy +/galaxy/data/location/twobit.loc " SAMPLES=" @@ -63,11 +66,13 @@ for link in $LINKS; do echo "Linking $link" + rm -f tool-data/`basename $link` ln -sf $link tool-data done if [ -d "$HYPHY" ]; then echo "Linking $HYPHY" + rm -f tool-data/HYPHY ln -sf $HYPHY tool-data/HYPHY fi