DRMAA bug in galaxy-central
Hi, since a few days there are frequent error messages popping up in my Galaxy log files. galaxy.jobs.runners ERROR 2014-01-17 13:11:17,094 Unhandled exception checking active jobs Traceback (most recent call last): File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/runners/__init__.py", line 358, in monitor self.check_watched_items() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 238, in check_watched_items if self.runner_params[ retry_param ] > 0: TypeError: 'RunnerParams' object has no attribute '__getitem__' Cheers, Bjoern
It is hard to test error states... but I assume you have the setup for it :). Any chance you can apply these patches and let me know if they fix the problem? I assume they will. https://bitbucket.org/galaxy/galaxy-central/pull-request/300/potential-drmaa... -John On Fri, Jan 17, 2014 at 6:15 AM, Bjoern Gruening <bjoern.gruening@gmail.com> wrote:
Hi,
since a few days there are frequent error messages popping up in my Galaxy log files.
galaxy.jobs.runners ERROR 2014-01-17 13:11:17,094 Unhandled exception checking active jobs Traceback (most recent call last): File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/runners/__init__.py", line 358, in monitor self.check_watched_items() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 238, in check_watched_items if self.runner_params[ retry_param ] > 0: TypeError: 'RunnerParams' object has no attribute '__getitem__'
Cheers, Bjoern
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Thanks John, that fixed it for me! Have a nice weekend, Bjoern
It is hard to test error states... but I assume you have the setup for it :). Any chance you can apply these patches and let me know if they fix the problem? I assume they will.
https://bitbucket.org/galaxy/galaxy-central/pull-request/300/potential-drmaa...
-John
On Fri, Jan 17, 2014 at 6:15 AM, Bjoern Gruening <bjoern.gruening@gmail.com> wrote:
Hi,
since a few days there are frequent error messages popping up in my Galaxy log files.
galaxy.jobs.runners ERROR 2014-01-17 13:11:17,094 Unhandled exception checking active jobs Traceback (most recent call last): File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/runners/__init__.py", line 358, in monitor self.check_watched_items() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 238, in check_watched_items if self.runner_params[ retry_param ] > 0: TypeError: 'RunnerParams' object has no attribute '__getitem__'
Cheers, Bjoern
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
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Bjoern Gruening -
Björn Grüning
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John Chilton