well in case anyone come across a similar problem. I finally found out that
it wasnt a blast specific issue but a general thing. This is I could not
visualize any data, even the one i uploaded, but this didnt happen and
could see everything if i had the module x_accel_redirect disable.
After a while found that this issue was easily solve just adding a "listen
80;" under the nginx configuration.
Now it looks something like this:
#access_log logs/host.access.log main;
Didnt check how to solve this issue with the equivalent Apache2 xsendfile.
Just wonder if this should be added to the
On Tue, Oct 13, 2015 at 3:01 PM, Juan Carlos <jcsanchez2(a)gmail.com> wrote:
doing some more test realized that when leave "sanitize_all_html = False"
i cant actually see any html result. So really thinking is something to do
with the apache2 settings.
I followed all the step at
but maybe didnt take into account something else.
Anyone has any idea to help?
On Fri, Oct 9, 2015 at 12:24 PM, Juan Carlos <jcsanchez2(a)gmail.com> wrote:
> Hi Peter,
> Just checked it and the HTML output from BLAST+ seems ok.
> As you said I also think is related to some issue with the security of
> Galaxy. Everywhere i checked they only mention the sanitize parameter, dont
> know what else could be, even thinking if it could be something in the
> apache2 configuration
> so still trying to find out
> On Thu, Oct 8, 2015 at 7:04 PM, Peter Cock <p.j.a.cock(a)googlemail.com>
>> Hi Juan,
>> It does sounds like something in Galaxy's HTML security
>> code could be to blame...
>> Do you have any other HTML producing tools installed?
>> It would be useful to see how their output behaves. e.g.
>> The BLAST+ tools offer (very simple ugly) HTML output
>> On Thu, Oct 8, 2015 at 7:54 AM, Juan Carlos <jcsanchez2(a)gmail.com>
>> > Hi,
>> > I'm new to galaxy and trying to set up a local blast tool, and maybe
>> this is
>> > due to a silly mistake
>> > So far so good all is working but when trying to use blast2html i just
>> get a
>> > "blank" page (even if the html is being generated), this happens
>> > the recommended setting in the configuration file
>> > "sanitize_all_html = False"
>> > Tried with "sanitize_all_html = True" and was able to see the
>> > with the message of the results being stripped.....to be sure that at
>> > was working
>> > Thanks for any help!!
>> > jc
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