Error while running freshly installed velvet
Hi galaxy-dev community, I recently installed velevetoptimiser via the toolshed. I copied binaries in the tool directory on our local Galaxy. I wanted to give it a try to confirm installation was correct and get the following error message (see below). I know that the output files are created via Galaxy with some name looking like dataset_###.dat, one of this should be corresponding to 'contig.fa'. Could it be that python script is not looking for the right file name ? As anybody saw the same error before? Thanks Traceback (most recent call last): File "/data/galaxyTools/shed_tools_dev/toolshed.g2.bx.psu.edu/repos/konradpaszkiewicz/velvetoptimiser/50ae1360fbbe/velvetoptimiser/velvet_optimiser.py", line 102, in <module> if __name__ == "__main__": __main__() File "/data/galaxyTools/shed_tools_dev/toolshed.g2.bx.psu.edu/repos/konradpaszkiewicz/velvetoptimiser/50ae1360fbbe/velvetoptimiser/velvet_optimiser.py", line 67, in __main__ for line in open(contigs_path ): IOError: [Errno 2] No such file or directory: 'contigs.fa'
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Philipe Moncuquet