Re: [galaxy-dev] Help Galaxy
Hello, Galaxy workflow and history structure is stored in Galaxy's database vs. flat files so you can't just find the representation of those on the file system. I actually don't know if there is any documentation about the JSON structure for those artifacts - I've CC'd the -dev mailing list so someone there might know (btw, emailing the -dev list is preferred with questions like these because your question get more exposure). In the mean time, you can explore the API documentation (available here<http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bioblend.galaxy.workflows>and here<https://galaxy-central.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.api.html#galaxy.webapps.galaxy.api.workflows.WorkflowsAPIController>) because that's where JSON objects can be retrieved. Hope this helps, Enis On Thu, Apr 24, 2014 at 3:33 PM, yattara Moussa <moussayattara2@yahoo.fr>wrote:
Hello, I'm working at South Paris University (Université Paris-Sud) Computer Science Research Laboratory (LRI), France.
I'm working on Galaxy.
I need to know about Galaxy syntax for worklfow internal structure description with JSON, and Galaxy workflow history.
*if you have any technical document describing the JSON syntax used for the storage of Galaxy workflow and Galaxy history, it will be very nice if you can send it to me.
*I installed Galaxy on ubuntu, In which directory can I find workflow histories files ?.
Thank you for your considération, I look forward to hearing from you.
Moussa YATTARA.
Hi Moussa, as Enis suggests please read the documentation and/or just call the API on your local instance and see what it returns. e.g. calling {{localhost}}/api/workflows?key={{API_key}} on my local instance results in https://gist.github.com/martenson/6b8e1d402fa193c914a5 Nice tool for calling API from browser is Postman http://www.getpostman.com/ M. On Thu, Apr 24, 2014 at 10:49 AM, Enis Afgan <afgane@gmail.com> wrote:
Hello, Galaxy workflow and history structure is stored in Galaxy's database vs. flat files so you can't just find the representation of those on the file system.
I actually don't know if there is any documentation about the JSON structure for those artifacts - I've CC'd the -dev mailing list so someone there might know (btw, emailing the -dev list is preferred with questions like these because your question get more exposure). In the mean time, you can explore the API documentation (available here<http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bioblend.galaxy.workflows>and here<https://galaxy-central.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.api.html#galaxy.webapps.galaxy.api.workflows.WorkflowsAPIController>) because that's where JSON objects can be retrieved.
Hope this helps, Enis
On Thu, Apr 24, 2014 at 3:33 PM, yattara Moussa <moussayattara2@yahoo.fr>wrote:
Hello, I'm working at South Paris University (Université Paris-Sud) Computer Science Research Laboratory (LRI), France.
I'm working on Galaxy.
I need to know about Galaxy syntax for worklfow internal structure description with JSON, and Galaxy workflow history.
*if you have any technical document describing the JSON syntax used for the storage of Galaxy workflow and Galaxy history, it will be very nice if you can send it to me.
*I installed Galaxy on ubuntu, In which directory can I find workflow histories files ?.
Thank you for your considération, I look forward to hearing from you.
Moussa YATTARA.
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Hi, Thanks, great !, i'll try it. Moussa. Le Jeudi 24 avril 2014 17h47, Martin Čech <marten@bx.psu.edu> a écrit : Hi Moussa, as Enis suggests please read the documentation and/or just call the API on your local instance and see what it returns. e.g. calling {{localhost}}/api/workflows?key={{API_key}} on my local instance results in https://gist.github.com/martenson/6b8e1d402fa193c914a5 Nice tool for calling API from browser is Postman http://www.getpostman.com/ M. On Thu, Apr 24, 2014 at 10:49 AM, Enis Afgan <afgane@gmail.com> wrote: Hello,
Galaxy workflow and history structure is stored in Galaxy's database vs. flat files so you can't just find the representation of those on the file system.
I actually don't know if there is any documentation about the JSON structure for those artifacts - I've CC'd the -dev mailing list so someone there might know (btw, emailing the -dev list is preferred with questions like these because your question get more exposure). In the mean time, you can explore the API documentation (available here and here) because that's where JSON objects can be retrieved.
Hope this helps, Enis
On Thu, Apr 24, 2014 at 3:33 PM, yattara Moussa <moussayattara2@yahoo.fr> wrote:
Hello,
I'm working at South Paris University (Université Paris-Sud) Computer Science Research Laboratory (LRI), France.
I'm working on Galaxy.
I need to know about Galaxy syntax for worklfow internal structure description with JSON, and Galaxy workflow history.
*if you have any technical document describing the JSON syntax used for the storage of Galaxy workflow and Galaxy history, it will be very nice if you can send it to me.
*I installed Galaxy on ubuntu, In which directory can I find workflow histories files ?.
Thank you for your considération, I look forward to hearing from you.
Moussa YATTARA.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
-
Enis Afgan -
Martin Čech -
yattara Moussa