Consider the following sequence:
1. Goto http://toolshed.g2.bx.psu.edu/view/bgruening/interproscan
2. The README file explains this is for InterProScan 4, and has a link to http://toolshed.g2.bx.psu.edu/view/bgruening/interproscan5 for Bjoern's InterProScan 45 wrapper.
3. Click the link for InterProScan 5.
4. Notice the link opened within the frame, and you now have a nested tool shed menu.
5. Click on the link to InterPro itself, http://www.ebi.ac.uk/interpro/interproscan.html
6. Notice the double nested frame remains, and now the InterPro page is squeezed into the bottom left.
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This isn't specific to these repositories, e.g.
1. Goto http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
2. The README file introduction refers to the tool being available on the main tool shed,
"It is available from the Galaxy Tool Shed at: http://toolshed.g2.bx.psu.edu/view/peterjc/blast2go "
3. Click on that link
4. Observe a double nested tool shed interface, with the Test Tool Shed at the top, and the Main Tool Shed nested within.
-----
Suggested fix: All links within Tool Shed README files should be modified to open full frame by adding target="_top" to them.
Peter
Hello Peter,
I've created teh following Trello card for this:
https://trello.com/c/Vg12cS7o/1174-toolshed-frames-issue-with-readme-file-li...
Thanks,
Greg Von Kuster
On Oct 8, 2013, at 10:44 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
Consider the following sequence:
Goto http://toolshed.g2.bx.psu.edu/view/bgruening/interproscan
The README file explains this is for InterProScan 4, and has
a link to http://toolshed.g2.bx.psu.edu/view/bgruening/interproscan5 for Bjoern's InterProScan 45 wrapper.
Click the link for InterProScan 5.
Notice the link opened within the frame, and you now have a
nested tool shed menu.
- Click on the link to InterPro itself,
http://www.ebi.ac.uk/interpro/interproscan.html
- Notice the double nested frame remains, and now the InterPro
page is squeezed into the bottom left.
This isn't specific to these repositories, e.g.
Goto http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
The README file introduction refers to the tool being available
on the main tool shed,
"It is available from the Galaxy Tool Shed at: http://toolshed.g2.bx.psu.edu/view/peterjc/blast2go "
Click on that link
Observe a double nested tool shed interface, with the Test
Tool Shed at the top, and the Main Tool Shed nested within.
Suggested fix: All links within Tool Shed README files should be modified to open full frame by adding target="_top" to them.
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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