Galaxy Docker and Tool Shed repository for Chinese researchers?
Galaxy developers, I am programmer from BGI-Shenzhen,China.And I came accross some problems in the Galaxy docker and I need your advices. As we known,Galaxy supports running tools within Docker containers since August 2014 release.I don't clear know why we need to develop the galaxy docker and what will improve by running galaxy tools whitin docker.Are there any details about that ? We also want to make a Galaxy Tool Shed repository for Chinese biomedicine researchers,can us get the Galaxy Tool Shed repository from https://toolshed.g2.bx.psu.edu/? And how to make it ? Thank you very much. Best regards Steven Shen ------------------ 沈维燕 | Steven Shen China National GeneBank Mobile +86 186 8228 6556 Building No.11, Beishan Industrial Zone, Yantian District, Shenzhen China
Hi Steven, Using Docker can simplify deployment, enhance reproducibility, and enhance security with the eventual goal of allowing users to run untrusted code on the shared Galaxy infrastructure, to name a few reasons. For details on how to set up your own tool shed, this page should help you out: https://wiki.galaxyproject.org/HostingALocalToolShed Let me know if you have any other questions, good luck! -Dannon On Mon, Dec 1, 2014 at 2:02 AM, Weiyan Shen <shenwiyn@gmail.com> wrote:
Galaxy developers, I am programmer from BGI-Shenzhen,China.And I came accross some problems in the Galaxy docker and I need your advices. As we known,Galaxy supports running tools within Docker containers since August 2014 release.I don't clear know why we need to develop the galaxy docker and what will improve by running galaxy tools whitin docker.Are there any details about that ? We also want to make a Galaxy Tool Shed repository for Chinese biomedicine researchers,can us get the Galaxy Tool Shed repository from https://toolshed.g2.bx.psu.edu/ <https://toolshed.g2.bx.psu.edu/repos/crs4/edena>? And how to make it ? Thank you very much. Best regards Steven Shen ------------------ 沈维燕 | Steven Shen China National GeneBank Mobile +86 186 8228 6556 Building No.11, Beishan Industrial Zone, Yantian District, Shenzhen China
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participants (2)
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Dannon Baker
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Weiyan Shen