Hello, I recently updated my instance of Galaxy Cloudman (using Amazon AWS) and I have since not been able to run any jobs. I get the following error: WARNING:galaxy.datatypes.registry:Error loading datatype with extension 'blastxml': 'module' object has no attribute 'BlastXml' WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.xml:BlastXml' to sniff_order: 'module' object has no attribute 'BlastXml' Any help would greatly be appreciated. Cheers, Mo Heydarian PhD candidate The Johns Hopkins School of Medicine Department of Biological Chemistry 725 Wolfe Street 414 Hunterian Baltimore, MD 21205
Hi The BLAST+ tools and the definition of the blastxml format were moved to the tool shed. You should have seen a migration message during the update... If you are not using these tools, perhaps you have a legacy reference to the blastxml file which should be removed? If you are using BLAST+ they and the blastxml format need to be installed from the ToolShed, Peter On Wednesday, August 29, 2012, Mohammad Heydarian wrote:
Hello, I recently updated my instance of Galaxy Cloudman (using Amazon AWS) and I have since not been able to run any jobs. I get the following error:
WARNING:galaxy.datatypes.registry:Error loading datatype with extension 'blastxml': 'module' object has no attribute 'BlastXml' WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.xml:BlastXml' to sniff_order: 'module' object has no attribute 'BlastXml'
Any help would greatly be appreciated.
Cheers, Mo Heydarian
participants (2)
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Mohammad Heydarian
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Peter Cock