Re: [galaxy-dev] Speed up the galaxy
Hi all,
How can I speed up the galaxy? Like how to use more cores and memeries.
http://wiki.galaxyproject.org/Admin/Config/Performance/Production%20Server http://wiki.galaxyproject.org/Admin/Config/Performance/Web%20Application%20S... HTH, ido
This Galaxy speed and production question reminded me that I have been meaning to raise the following question on the list: For a single job (workflow item), It seems like there is a 20 second lag before the job is launched. It gives the impression that Galaxy is slow and unresponsive (in the sports car sense). I imagine that it is a combination of python's poor thread architecture and web polling latency. Has anyone looked into the latency of running a process? Ted
Hi Ted You can cut down the lag by 5 secs if you delete the "time.sleep( 5 )" in '~/lib/galaxy/jobs/manager.py' ( line 155) (see also my e-mail from Nov 7: in this email conversation: http://dev.list.galaxyproject.org/Jobs-are-slow-to-start-on-my-galaxy-instan... There has been a follow up discussion on the IRC Channel: as it turns out, this time delay is necessary for certain users, depending on their set-up - Hence be careful, when deleting it. Regards, Hans-Rudolf On 12/04/2012 04:19 PM, Ted Goldstein (PhD candidate) wrote:
This Galaxy speed and production question reminded me that I have been meaning to raise the following question on the list:
For a single job (workflow item), It seems like there is a 20 second lag before the job is launched. It gives the impression that Galaxy is slow and unresponsive (in the sports car sense). I imagine that it is a combination of python's poor thread architecture and web polling latency. Has anyone looked into the latency of running a process?
Ted
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
-
Hans-Rudolf Hotz
-
Ido Tamir
-
Ted Goldstein (PhD candidate)