details: http://www.bx.psu.edu/hg/galaxy/rev/d93cf9d961bb changeset: 1546:d93cf9d961bb user: guru date: Mon Oct 06 09:40:47 2008 -0400 description: Updating "regional variation' section in tool_conf.xml.main.

1 file(s) affected in this change:

tool_conf.xml.main

diffs (33 lines):

diff -r cec03ea2d5aa -r d93cf9d961bb tool_conf.xml.main --- a/tool_conf.xml.main Mon Oct 06 09:33:52 2008 -0400 +++ b/tool_conf.xml.main Mon Oct 06 09:40:47 2008 -0400 @@ -122,14 +122,22 @@ <tool file="visualization/build_ucsc_custom_track.xml" /> </section> <section name="Regional Variation" id="regVar"> - <tool file="regVariation/windowSplitter.xml" /> - <tool file="regVariation/featureCounter.xml" /> - <tool file="regVariation/quality_filter.xml" /> + <tool file="regVariation/windowSplitter.xml" /> + <tool file="regVariation/featureCounter.xml" /> + <tool file="regVariation/quality_filter.xml" /> <tool file="regVariation/maf_cpg_filter.xml" /> - <!-- - <tool file="regVariation/getIndels_2way.xml" /> - <tool file="regVariation/getIndels_3way.xml" /> - --> + <tool file="regVariation/getIndels_2way.xml" /> + <tool file="regVariation/getIndels_3way.xml" /> + <tool file="regVariation/getIndelRates_3way.xml" /> + <tool file="regVariation/substitutions.xml" /> + <tool file="regVariation/substitution_rates.xml" /> + <tool file="regVariation/microsats_alignment_level.xml" /> + <tool file="regVariation/microsats_mutability.xml" /> + </section> + <section name="Multiple regression" id="multReg"> + <tool file="regVariation/linear_regression.xml" /> + <tool file="regVariation/best_regression_subsets.xml" /> + <tool file="regVariation/rcve.xml" /> </section> <section name="Evolution: HyPhy" id="hyphy"> <tool file="hyphy/hyphy_branch_lengths_wrapper.xml" />