Hello Sajoscha, If you're pulling from central to get this fix, this is the change set that should be used - it includes some additional fixes: 255f4bde822b Again, sorry for the inconvenience. On Nov 22, 2011, at 5:18 PM, Greg Von Kuster wrote:

Hello Sajoscha,

I've committed a fix for this (I believe) in change set 6326:af8f5887b977, which is available in our central repository at https://bitbucket.org/galaxy/galaxy-central. This fix will not be available in the Galaxy distribution for a while - very sorry for any inconvenience. If you want it now you can pull from the central repo to get it.

Thanks for letting me know about this issue.

Greg Von Kuster

On Nov 22, 2011, at 10:22 AM, Sajoscha Sauer wrote:

...

Hi all,

We are just about to enable the Toolshed on our development installation of Galaxy.

We run the latest build (rev. b258de1e6cea) of Galaxy.

The toolshed that we try to access is 'http://toolshed.g2.bx.psu.edu/'

Our workflow is the following: - On the admin panel, click 'Search and browse tool sheds' - 'Browse valid repositories' on 'Galaxy main tool shed' - Select any tool and 'Preview and install' - 'Install to local Galaxy'

What we see on the website is:

<Screen Shot 2011-11-22 at 4.13.56 PM.png>

The apache error log says:

<Screen Shot 2011-11-22 at 4.06.34 PM.png>

Any ideas and/or hints?

Thanks a lot for your help!

Sajoscha ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

Greg Von Kuster Galaxy Development Team greg@bx.psu.edu

Greg Von Kuster Galaxy Development Team greg@bx.psu.edu

Hi Sajoscha, What were you attempting to do when you saw this error? Are you still seeing this when you attempt to install a tool from the tool shed? By the way,m I just sent you an email - there are a few more fixes in the latest change set. On Nov 23, 2011, at 11:26 AM, Sajoscha Sauer wrote:

Hi Greg,

Thanks for the quick response!

We updated to the newest version from the Galaxy central repository, but still get the same error. But now there is a different error (or better, a different referer) in the apache log, see below.

<Screen Shot 2011-11-23 at 5.11.19 PM.png>

Thanks again for your help!

Sajoscha

On Nov 22, 2011, at 4:22 PM, Sajoscha Sauer wrote:

...

Hi all,

We are just about to enable the Toolshed on our development installation of Galaxy.

We run the latest build (rev. b258de1e6cea) of Galaxy.

The toolshed that we try to access is 'http://toolshed.g2.bx.psu.edu/'

Our workflow is the following: - On the admin panel, click 'Search and browse tool sheds' - 'Browse valid repositories' on 'Galaxy main tool shed' - Select any tool and 'Preview and install' - 'Install to local Galaxy'

What we see on the website is:

<Screen Shot 2011-11-22 at 4.13.56 PM.png>

The apache error log says:

<Screen Shot 2011-11-22 at 4.06.34 PM.png>

Any ideas and/or hints?

Thanks a lot for your help!

Sajoscha ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

Greg Von Kuster Galaxy Development Team greg@bx.psu.edu

I've recently added the following section to the tool shed wiki. Since you are using apache, make sure you have all of the necessary settings in community_wsgi.ini. Let me know if this is not the issue, and I'll need to see a complete paste log showing the exceptions as well as a copy of your community_wsgi.ini file. thanks, Greg Von Kuster http://wiki.g2.bx.psu.edu/Tool%20Shed#Hosting_your_own_local_tool_shed On Nov 30, 2011, at 7:22 AM, Sajoscha Sauer wrote:

Hi Greg,

Sorry for the late reply!

Yes, we see the error when trying to install a tool from the Galaxy tool sheds ('Install to local Galaxy')

We are now back on yesterdays revision (3ee9430186fb)

Thanks, Sajoscha

On Nov 23, 2011, at 5:34 PM, Greg Von Kuster wrote:

...

Hi Sajoscha,

What were you attempting to do when you saw this error? Are you still seeing this when you attempt to install a tool from the tool shed? By the way,m I just sent you an email - there are a few more fixes in the latest change set.

On Nov 23, 2011, at 11:26 AM, Sajoscha Sauer wrote:

...

Hi Greg,

Thanks for the quick response!

We updated to the newest version from the Galaxy central repository, but still get the same error. But now there is a different error (or better, a different referer) in the apache log, see below.

<Screen Shot 2011-11-23 at 5.11.19 PM.png>

Thanks again for your help!

Sajoscha

On Nov 22, 2011, at 4:22 PM, Sajoscha Sauer wrote:

...

Hi all,

We are just about to enable the Toolshed on our development installation of Galaxy.

We run the latest build (rev. b258de1e6cea) of Galaxy.

The toolshed that we try to access is 'http://toolshed.g2.bx.psu.edu/'

Our workflow is the following: - On the admin panel, click 'Search and browse tool sheds' - 'Browse valid repositories' on 'Galaxy main tool shed' - Select any tool and 'Preview and install' - 'Install to local Galaxy'

What we see on the website is:

<Screen Shot 2011-11-22 at 4.13.56 PM.png>

The apache error log says:

<Screen Shot 2011-11-22 at 4.06.34 PM.png>

Any ideas and/or hints?

Thanks a lot for your help!

Sajoscha ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

Greg Von Kuster Galaxy Development Team greg@bx.psu.edu

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

Greg Von Kuster Galaxy Development Team greg@bx.psu.edu