Problem sharing histories

2 Jun 2015

      Hi Nate,

Although it was working fine in the past (and older shared histories are still shared) we are currently experiencing an issue sharing histories on our local Galaxy server. I really don’t understand the error messages at all, other than it looking like its possible a proxy/webserver issue. After entering an email (which is a list for admin users but blank for non-admin users) I get the Internal Server Error page. Here is the log:

127.0.0.1 - - [02/Jun/2015:10:41:35 +0100] "GET /api/users?f_email=&_=1433238093664 HTTP/1.1" 200 - "http://****.****.ucl.ac.uk:8080/history/share?use_panels=False&id=93d12697461a7974" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_10_3) AppleWebKit/600.6.3 (KHTML, like Gecko) Version/8.0.6 Safari/600.6.3"
127.0.0.1 - - [02/Jun/2015:10:41:46 +0100] "GET /api/users?f_email=&_=1433238093665 HTTP/1.1" 200 - "http://****.****.ucl.ac.uk:8080/history/share?use_panels=False&id=93d12697461a7974" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_10_3) AppleWebKit/600.6.3 (KHTML, like Gecko) Version/8.0.6 Safari/600.6.3"
127.0.0.1 - - [02/Jun/2015:10:41:48 +0100] "POST /history/share HTTP/1.1" 500 - "http://****.****.ucl.ac.uk:8080/history/share?use_panels=False&id=93d12697461a7974" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_10_3) AppleWebKit/600.6.3 (KHTML, like Gecko) Version/8.0.6 Safari/600.6.3"
Error - <type 'exceptions.TypeError'>: append() takes exactly one argument (0 given)
URL: http://****.****.ucl.ac.uk:8080/history/share
File '/Users/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
  app_iter = self.application(environ, sr_checker)
File '/Library/Python/2.7/site-packages/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
  return self.application(environ, start_response)
File '/Library/Python/2.7/site-packages/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
  return self.application(environ, start_response)
File '/Users/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 133 in __call__
  return self.handle_request( environ, start_response )
File '/Users/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 191 in handle_request
  body = method( trans, **kwargs )
File '/Users/galaxy/galaxy-dist/lib/galaxy/web/framework/decorators.py', line 64 in decorator
  return func( self, trans, *args, **kwargs )
File '/Users/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/history.py', line 783 in share
  histories = self._get_histories( trans, id )
File '/Users/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/history.py', line 902 in _get_histories
  histories.append(  )
TypeError: append() takes exactly one argument (0 given)

CGI Variables
-------------
  CONTENT_LENGTH: '-1'
  CONTENT_TYPE: 'application/x-www-form-urlencoded'
  HTTP_ACCEPT: 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
  HTTP_ACCEPT_ENCODING: 'gzip, deflate'
  HTTP_ACCEPT_LANGUAGE: 'en-us'
  HTTP_CONNECTION: 'close'
  HTTP_COOKIE: 'galaxysession=c6ca0ddb55be603affb9e7f3db8ec24e38c21f8e92c63c0423b0bca935c4829106a35253947071a3; __utma=156947391.1608730577.1432903437.1432903437.1432903437.1; __utmz=156947391.1432903437.1.1.utmcsr=(direct)|utmccn=(direct)|utmcmd=(none)'
  HTTP_DNT: '1'
  HTTP_HOST: '****.****.ucl.ac.uk<http://ucl.ac.uk>:8080'
  HTTP_ORIGIN: 'http://****.****.ucl.ac.uk:8080'
  HTTP_REFERER: 'http://****.****.ucl.ac.uk:8080/history/share?use_panels=False&id=93d12697461a7974'
  HTTP_USER_AGENT: 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_10_3) AppleWebKit/600.6.3 (KHTML, like Gecko) Version/8.0.6 Safari/600.6.3'
  HTTP_X_FORWARDED_FOR: '127.0.0.1'
  HTTP_X_FORWARDED_HOST: '****.****.ucl.ac.uk<http://ucl.ac.uk>:8080'
  HTTP_X_FORWARDED_SERVER: '****.****.ucl.ac.uk<http://ucl.ac.uk>'
  ORGINAL_HTTP_HOST: 'localhost:8081'
  ORGINAL_REMOTE_ADDR: '127.0.0.1'
  PATH_INFO: '/history/share'
  REMOTE_ADDR: '127.0.0.1'
  REQUEST_METHOD: 'POST'
  SERVER_NAME: '0.0.0.0'
  SERVER_PORT: '8081'
  SERVER_PROTOCOL: 'HTTP/1.1'

WSGI Variables
--------------
  application: <paste.recursive.RecursiveMiddleware object at 0x10cc3e290>
  is_api_request: False
  paste.cookies: (<SimpleCookie: __utma='156947391.1608730577.1432903437.1432903437.1432903437.1' __utmz='156947391.1432903437.1.1.utmcsr=(direct)|utmccn=(direct)|utmcmd=(none)' galaxysession='c6ca0ddb55be603affb9e7f3db8ec24e38c21f8e92c63c0423b0bca935c4829106a35253947071a3'>, 'galaxysession=c6ca0ddb55be603affb9e7f3db8ec24e38c21f8e92c63c0423b0bca935c4829106a35253947071a3; __utma=156947391.1608730577.1432903437.1432903437.1432903437.1; __utmz=156947391.1432903437.1.1.utmcsr=(direct)|utmccn=(direct)|utmcmd=(none)')
  paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPException'>]
  paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object at 0x10cc3e1d0>
  paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at 0x10d21f690>
  paste.recursive.forward: <paste.recursive.Forwarder from />
  paste.recursive.include: <paste.recursive.Includer from />
  paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from />
  paste.recursive.script_name: ''
  paste.throw_errors: True
  request_id: '96fdc0dc090b11e5aa28685b359a2712'
  webob._parsed_post_vars: (MultiDict([('id', '93d12697461a7974'), ('email', '33b43b4e7093c91f'), ('share_button', 'Submit')]), <FakeCGIBody at 10d4be2d0 viewing MultiDict([('id...t')])>)
  webob._parsed_query_vars: (MultiDict([]), '')
  wsgi process: 'Multithreaded'
------------------------------------------------------------

Any help with this greatly appreciated :)

Richard

Richard J Poole PhD
Wellcome Trust Fellow
Department of Cell and Developmental Biology
University College London
21 University Street, London WC1E 6DE
Office (518 Rockefeller): +44 20 7679 6577 (int. 46577)
Lab (529 Rockefeller): +44 20 7679 6133 (int. 46133)

Poole, Richard

Marius van den Beek

John Chilton

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