Hello Rui, The problem here is that flexbar repository on the main Galaxy Tool Shed does not define a relationship between the flexbar tool contained within the repository and a recipe for installing the flexbar binary dependency. The flexbar tool config includes the following requirements tag set: <requirements> <requirement type="binary" version="2.4">flexbar</requirement> </requirements> But there is no information about how to install the flexbar binary. The tool should have a a relationship to a recipt for installing the flexbar binary using the approach described here: https://wiki.galaxyproject.org/ToolsWitDependenciesInSeparateRepositories You can contact the tool author to report this problem. In the meantime, to use the tool, you'll have to install the flexbar dependency manually and make sure it can be found in the environment in which the tool is executed. Greg Von Kuster On May 19, 2014, at 10:07 PM, "ruiwang.sz" <ruiwang.sz@gmail.com> wrote:

Hi Guys,

I tried to install flexbar from toolshed, but upon running, error said it could not find it.

I checked and found

<id>toolshed.g2.bx.psu.edu/repos/jtilman/flexbar/flexbar/2.4</id>

in the config file, but this path does not exist.

Is it that I need to install the dependency on my own? I had the impression that toolshed will do it for me. Please correct me if I'm wrong.

Thanks, Rui ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

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