On Jun 28, 2013, at 12:35 PM, Nicholas Kline wrote:

Hi,

Our lab recently installed a local version of Galaxy on a mid-2012 Mac Pro computer. We can access the Galaxy server and sign in as an administrator. Today we tried creating a Data Library, adding a dataset to it, and uploading a directory of files. We followed the Galaxy documentation at http://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles?action=show&redirect=Admin%2FData+Libraries%2FUploading+Library+Files to setup this feature:

- Admin > Data Library > Add datasets > Upload directory of files - file format was set to auto-detect - and we chose the option to link to files instead of copying them

Galaxy confirmed that the files were successfully uploaded. However, in the data library, under the Message column, is a message in red saying "Job error (click name for more info)". Clicking on one of the uploaded files displays a page with this information:

Date uploaded: 2013-06-28

File size: 7.5 GB

Data type: auto

Build: sacCer2

Miscellaneous information: Traceback (most recent call last): File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 386, in __main__() File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 357, in __main__ output_paths =

Job Standard Error Traceback (most recent call last): File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 386, in __main__() File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 357, in __main__ output_paths = parse_outputs( sys.argv[4:] ) File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 64, in parse_outputs id, files_path, path = arg.split( ':', 2 ) ValueError: need more than 1 value to unpack error

Database/Build: sacCer2 Number of data lines: None Disk file: /Volumes/G-SPEED Q/data/Person 2012 project/DCP2 mef.fastq

Hi Nicholas, Could you try re-adding the data to the library with the spaces removed from all path components? I thought this had been fixed a long time ago but it's possible that the bug reappeared at some point. --nate

Questions: 1. Should we be concerned about this error? 2. If so, what is the right way to fix it? 3. If not, how do we remove the red error message next to each file: "Job error (click name for more info)" ?

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