Hello, I have just installed the tool "samtools_stats" from the toolshed. In the synopsis says: "This tool runs the samtools stats command in the SAMtools toolkit, collecting statistics from BAM files. The output can be visualized using plot-bamstat ", but I haven't found any tool to visualize it with plot-bamstat. Do you know if there is such tool or another similar? Best regards, Jose
Hej Jose, according to this https://wiki.galaxyproject.org/Events/GCC2015?action=AttachFile&do=get&target=S6_T1_interactive-environments.pdf http://bam.iobio.io/ is coming soon for galaxy. Cheers Jochen On 16.10.2015 15:36, Jose Juan Almagro Armenteros wrote:
Hello,
I have just installed the tool "samtools_stats" from the toolshed. In the synopsis says: "This tool runs the samtools stats command in the SAMtools toolkit, collecting statistics from BAM files. The output can be visualized using plot-bamstat ", but I haven't found any tool to visualize it with plot-bamstat.
Do you know if there is such tool or another similar?
Best regards,
Jose
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On 16.10.2015 16:08, Jochen Bick wrote:
Hej Jose,
according to this
http://bam.iobio.io/ is coming soon for galaxy.
Ah, I feel the pressure :)
Cheers Jochen
On 16.10.2015 15:36, Jose Juan Almagro Armenteros wrote:
Hello,
I have just installed the tool "samtools_stats" from the toolshed. In the synopsis says: "This tool runs the samtools stats command in the SAMtools toolkit, collecting statistics from BAM files. The output can be visualized using plot-bamstat ", but I haven't found any tool to visualize it with plot-bamstat.
Do you know if there is such tool or another similar?
Best regards,
Jose
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
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Bjoern Gruening
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Jochen Bick
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Jose Juan Almagro Armenteros