fasta integration in galaxy
Dear All, I have just finished integrating my blast data to my galaxy local instance, and now I would like to add my fasta files. Does anybody know how can I do that ? How should it look in the UI ? Thanks, best regards Ben
Hello Ben, By fasta data, do you mean that you would like to add in local genomes? If so, these wiki pages have instructions: https://bitbucket.org/galaxy/galaxy-central/wiki/DataIntegration https://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup If instead you want to load large local files to do analysis, this prior mailing list response has the details: http://lists.bx.psu.edu/pipermail/galaxy-user/2011-March/002135.html Please let us know if your question has been misunderstood, Best, Jen Galaxy team On 6/30/11 6:55 AM, B M wrote:
Dear All, I have just finished integrating my blast data to my galaxy local instance, and now I would like to add my fasta files.
Does anybody know how can I do that ? How should it look in the UI ?
Thanks, best regards Ben
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Hello Jennifer, Thanks for your quick answer, I would like to upload large fasta files and make it available to the user interface for analysis with galaxy tools. I will have a look at the uploading/data librairies wiki page here : https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFile... . I 'll give you a feedback. Thanks, greetings, Ben
My fasta data are now integrated and available, If you encounter the problem, follow the wiki link : https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFile... I specify the location path of my data source in the universe_wsgi.ini file : as library_import_dir = /my/data/location and then import my data using the admin UI. Thanks for your answer Jennifer, best regards, Ben
participants (2)
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B M
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Jennifer Jackson