Monitoring Dashboard for Galaxy
I remember there previously being an additional tool that ran on a different port from galaxy that allowed for monitoring of performance and jobs running. Is this tool still packaged with galaxy and if so how can it be activated.
Hi Evan I assume you are talking about the 'reports' tool? Have a look here: https://galaxyproject.org/admin/usage-reports/ https://docs.galaxyproject.org/en/latest/admin/reports.html Additional (system) information about each executed job can be logged by activating plugins in the "./config/job_metrics_conf.xml" file. https://galaxyproject.org/admin/config/job-metrics/ Hope this helps Regards, Hans-Rudolf On 08/17/2017 04:25 PM, evan clark wrote:
I remember there previously being an additional tool that ran on a different port from galaxy that allowed for monitoring of performance and jobs running. Is this tool still packaged with galaxy and if so how can it be activated. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Dear Hans-Rudolf and list participants, We would like to set up the galaxy reports tool on our version 17.09 instance and we succeeded partially after modifying the "reports.yml" to point to our postgresql database. The webpage is generated, with all the stats, but looks very basic and the appropriate style-sheets are probably not found... Any advise on how to set this up properly would be very welcome. Best regards, Christopher On 08/17/2017 04:56 PM, Hans-Rudolf Hotz wrote:
Hi Evan
I assume you are talking about the 'reports' tool?
Have a look here:
https://galaxyproject.org/admin/usage-reports/ https://docs.galaxyproject.org/en/latest/admin/reports.html
Additional (system) information about each executed job can be logged by activating plugins in the "./config/job_metrics_conf.xml" file.
https://galaxyproject.org/admin/config/job-metrics/
Hope this helps Regards, Hans-Rudolf
On 08/17/2017 04:25 PM, evan clark wrote:
I remember there previously being an additional tool that ran on a different port from galaxy that allowed for monitoring of performance and jobs running. Is this tool still packaged with galaxy and if so how can it be activated. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
-- *Dr. Christopher Previti* Genomics and Proteomics Core Facility High Throughput Sequencing (W190) Bioinformatician German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg Germany Room: B2.102 (INF580/TP3) Phone: +49 6221 42-4661 christopher.previti@dkfz.de <http://www.dkfz.de/> www.dkfz.de <http://www.dkfz.de/> Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta VAT-ID No.: DE143293537 Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen bestimmt, an die sie adressiert ist. Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte Informationen enthalten. Sollten Sie nicht der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender und löschen Sie die Mitteilung. Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.
Hi Christopher Well, the look of the reports pages are very basic to start with..... what happens when you start the reports with "reports.ini" (i.e.: the "old way", see: https://docs.galaxyproject.org/en/release_17.05/admin/reports.html Hans-Rudolf On 08/31/2018 03:51 PM, Previti wrote:
Dear Hans-Rudolf and list participants,
We would like to set up the galaxy reports tool on our version 17.09 instance and we succeeded partially after modifying the "reports.yml" to point to our postgresql database.
The webpage is generated, with all the stats, but looks very basic and the appropriate style-sheets are probably not found...
Any advise on how to set this up properly would be very welcome.
Best regards,
Christopher
On 08/17/2017 04:56 PM, Hans-Rudolf Hotz wrote:
Hi Evan
I assume you are talking about the 'reports' tool?
Have a look here:
https://galaxyproject.org/admin/usage-reports/ https://docs.galaxyproject.org/en/latest/admin/reports.html
Additional (system) information about each executed job can be logged by activating plugins in the "./config/job_metrics_conf.xml" file.
https://galaxyproject.org/admin/config/job-metrics/
Hope this helps Regards, Hans-Rudolf
On 08/17/2017 04:25 PM, evan clark wrote:
I remember there previously being an additional tool that ran on a different port from galaxy that allowed for monitoring of performance and jobs running. Is this tool still packaged with galaxy and if so how can it be activated. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
-- *Dr. Christopher Previti* Genomics and Proteomics Core Facility High Throughput Sequencing (W190) Bioinformatician
German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg Germany Room: B2.102 (INF580/TP3) Phone: +49 6221 42-4661
christopher.previti@dkfz.de <http://www.dkfz.de/> www.dkfz.de <http://www.dkfz.de/>
Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta VAT-ID No.: DE143293537
Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen bestimmt, an die sie adressiert ist. Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte Informationen enthalten. Sollten Sie nicht der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender und löschen Sie die Mitteilung. Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.
participants (3)
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evan clark -
Hans-Rudolf Hotz -
Previti