Re: [galaxy-dev] Parallel job through galaxy
On Tue, Aug 16, 2011 at 11:13 AM, shashi shekhar <meshashi29@gmail.com> wrote:
Thanks Peter for reply But i want to use galaxy for parallel programs like mpi and opemp .will it support ?how can i configure for parallel programs ?
Please CC the mailing list. Tools using openmp should be easy. MPI is more complicated. First check you can submit test MPI jobs to PBS by hand, then setup the job runner in Galaxy to use the same settings. Peter
On Tue, Aug 16, 2011 at 3:46 PM, Peter Cock <p.j.a.cock@googlemail.com>wrote:
On Tue, Aug 16, 2011 at 11:13 AM, shashi shekhar <meshashi29@gmail.com> wrote:
Thanks Peter for reply But i want to use galaxy for parallel programs like mpi and opemp .will it support ?how can i configure for parallel programs ?
Please CC the mailing list.
Tools using openmp should be easy. MPI is more complicated. First check you can submit test MPI jobs to PBS by hand, then setup the job runner in Galaxy to use the same settings.
I have submitted some MPI jobs .it'sw working . but i didn't find change the number of processor in pbs script dynamically.Is there any mpi tool in Galaxy?
Peter
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Peter Cock -
shashi shekhar